CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G278900.1	Wheat	nucleus	70.67	70.67
TraesCS3B01G312800.1	Wheat	nucleus	70.67	70.67
TraesCS3A01G278600.1	Wheat	cytosol	63.94	69.27
Os01t0737600-00	Rice	cytosol	67.79	67.79
EES01441	Sorghum	cytosol, nucleus, plastid	65.38	64.76
KXG33324	Sorghum	cytosol	60.1	63.45
EES01443	Sorghum	cytosol	61.54	63.05
HORVU3Hr1G069990.1	Barley	nucleus	66.35	60.26
Os01t0737700-00	Rice	nucleus	64.9	57.69
EES03385	Sorghum	cytosol, nucleus, plastid	53.85	55.72
EES03384	Sorghum	nucleus	50.48	51.98
PGSC0003DMT400093830	Potato	cytosol	47.6	48.29
Solyc10g078200.1.1	Tomato	nucleus	46.63	47.32
VIT_08s0040g00710.t01	Wine grape	cytosol	46.63	46.63
OQU87276	Sorghum	nucleus	45.67	42.04
KRH00115	Soybean	nucleus	42.79	41.78
Solyc08g078620.1.1	Tomato	mitochondrion	41.35	41.55
PGSC0003DMT400094103	Potato	mitochondrion	41.35	40.38
Solyc11g006480.1.1	Tomato	nucleus	34.13	40.11
KRH49260	Soybean	cytosol, nucleus, peroxisome	40.87	40.09
Solyc01g103460.2.1	Tomato	cytosol	40.87	39.91
KRH00114	Soybean	cytosol	43.27	39.82
EES03381	Sorghum	nucleus	42.31	38.94
KRH00116	Soybean	cytosol	39.42	38.86
PGSC0003DMT400064032	Potato	nucleus	39.9	38.6
Solyc12g042390.1.1	Tomato	cytosol	39.9	38.25
KRH49255	Soybean	nucleus	43.27	37.82
PGSC0003DMT400032474	Potato	cytosol, nucleus, vacuole	41.83	37.34
Solyc08g007350.1.1	Tomato	cytosol	41.83	37.02
PGSC0003DMT400075613	Potato	nucleus	38.46	36.36
Solyc12g094540.1.1	Tomato	cytosol	35.58	36.27
PGSC0003DMT400036459	Potato	extracellular	37.02	35.65
GSMUA_Achr1P12990_001	Banana	plastid	32.21	35.26
PGSC0003DMT400032554	Potato	cytosol	42.31	34.92
KXG32361	Sorghum	mitochondrion	36.06	34.25
KRH00112	Soybean	nucleus	31.73	33.0
EES02313	Sorghum	mitochondrion, plastid	28.37	24.38
OQU88309	Sorghum	mitochondrion	25.48	21.72
EES11779	Sorghum	nucleus	28.37	18.97
EER95744	Sorghum	nucleus	32.69	13.96

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	EntrezGene:8062154	UniProt:C5XJ63	EnsemblPlants:EES01442
ProteinID:EES01442	ProteinID:EES01442.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987	GO:GO:0016787
GO:GO:0090305	InterPro:IPR036397	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF14	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	SMART:SM00474	EnsemblPlantsGene:SORBI_3003G289100	SUPFAM:SSF53098	UniParc:UPI0001A84924	RefSeq:XP_002456322.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:62191757..62192727

Molecular Weight (calculated)

23444.2 Da

IEP (calculated)

8.818

GRAVY (calculated)

-0.124

Length

208 amino acids

Sequence
(BLAST)

001: MATSIYRTED GHFVVWFDED AIHTTLTDSG AAVDSWLDEI RRVHRRRLNR LIVGIDVEWR PSRTTTNHVP PVALLQICVG RRCLVFKILH ADYVPQSLSD
101: FLADQRFAFV GVGVRDDAAK LRSGYGLKVG RMVDLRTLAA TKLRKPALRG AGLQALVSEV MGVEMEKPHH VRVSAWDAPK LTYDQLKYAC ADAFASFEVG
201: RRLFDGDY

Best Arabidopsis Sequence Match ( AT2G36110.1 )
(BLAST)

001: MARIRRRIQK RHIHENRYID FFGERLIVTV THTTSTIRRW IHSIRFFSRL RSSHPLVVGL DVQWTPGGSD PPPDILQLCV GNRCLIIQLS HCKRIPEVLR
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.