Factsheet for HORVU3Hr1G069990.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G278600.1	Wheat	cytosol	76.42	91.15
TraesCS3D01G278900.1	Wheat	nucleus	82.1	90.38
TraesCS3B01G312800.1	Wheat	nucleus	81.66	89.9
Os01t0737600-00	Rice	cytosol	62.88	69.23
EES01442	Sorghum	nucleus	60.26	66.35
KXG33324	Sorghum	cytosol	51.53	59.9
Os01t0737700-00	Rice	nucleus	59.39	58.12
HORVU7Hr1G071770.1	Barley	cytosol	44.54	48.11
PGSC0003DMT400093830	Potato	cytosol	41.92	46.83
VIT_08s0040g00710.t01	Wine grape	cytosol	41.92	46.15
Solyc10g078200.1.1	Tomato	nucleus	40.61	45.37
Solyc08g078620.1.1	Tomato	mitochondrion	38.86	43.0
HORVU0Hr1G006750.1	Barley	nucleus	37.55	42.57
KRH00114	Soybean	cytosol	40.61	41.15
KRH00115	Soybean	nucleus	37.99	40.85
KRH49255	Soybean	nucleus	42.36	40.76
Solyc01g103460.2.1	Tomato	cytosol	37.55	40.38
KRH00116	Soybean	cytosol	36.24	39.34
Solyc11g006480.1.1	Tomato	nucleus	30.13	38.98
Solyc08g007350.1.1	Tomato	cytosol	39.74	38.72
Solyc12g042390.1.1	Tomato	cytosol	36.68	38.71
KRH49260	Soybean	cytosol, nucleus, peroxisome	35.81	38.68
PGSC0003DMT400036459	Potato	extracellular	35.81	37.96
PGSC0003DMT400032474	Potato	cytosol, nucleus, vacuole	38.43	37.77
PGSC0003DMT400064032	Potato	nucleus	35.37	37.67
PGSC0003DMT400094103	Potato	mitochondrion	34.93	37.56
GSMUA_Achr1P12990_001	Banana	plastid	31.0	37.37
PGSC0003DMT400075613	Potato	nucleus	35.37	36.82
Solyc12g094540.1.1	Tomato	cytosol	32.31	36.27
PGSC0003DMT400032554	Potato	cytosol	39.3	35.71
HORVU7Hr1G098080.1	Barley	nucleus	30.57	35.53
HORVU3Hr1G021110.1	Barley	nucleus	30.57	35.53
KRH00112	Soybean	nucleus	28.82	33.0
HORVU2Hr1G001690.1	Barley	plastid	24.45	24.03

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	UniProt:A0A287LJ09	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008408	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	EnsemblPlantsGene:HORVU3Hr1G069990	EnsemblPlants:HORVU3Hr1G069990.1
InterPro:IPR036397	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF14	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SUPFAM:SSF53098	UniParc:UPI000B47E11B	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:530113265..530113998

Molecular Weight (calculated)

25600.7 Da

IEP (calculated)

7.595

GRAVY (calculated)

0.027

Length

229 amino acids

Sequence
(BLAST)

001: GFLIYTKTAV RTSKPRDGSY EMATSMVTDF GDGHCIVAFG QDHVHTTLTS SGDVVDEWLG LVYHIHRRRL DRLVVGLDVE WRPSLRGLPP GPVALLQLCV
101: GRRCLVFQIF RADYVPDSLF HFLADARFTF VGVGVFGDAQ KLSAHYGLQV ANTVDLRHLA ASALGKPALC RTGLQGLVWQ VMGVWPEKPY HVRVSAWDAP
201: WLTREQLQYA CADAFASFEV GRRLYDGDY

Best Arabidopsis Sequence Match ( AT3G12410.1 )
(BLAST)

001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.