Factsheet for HORVU0Hr1G006750.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G239900.1	Wheat	cytosol, nucleus, plastid	82.67	84.77
TraesCS3B01G268100.1	Wheat	cytosol, nucleus, plastid	81.68	83.76
TraesCS3A01G239600.1	Wheat	cytosol	81.68	83.76
Os01t0660800-01	Rice	nucleus	59.41	60.3
HORVU7Hr1G071770.1	Barley	cytosol	60.89	58.02
EES03384	Sorghum	nucleus	57.43	57.43
Zm00001d011507_P001	Maize	cytosol	56.44	56.44
VIT_08s0040g00710.t01	Wine grape	cytosol	40.59	39.42
PGSC0003DMT400093830	Potato	cytosol	39.11	38.54
Solyc11g006480.1.1	Tomato	nucleus	33.66	38.42
Solyc10g078200.1.1	Tomato	nucleus	38.61	38.05
HORVU3Hr1G069990.1	Barley	nucleus	42.57	37.55
Solyc12g094540.1.1	Tomato	cytosol	37.62	37.25
Solyc08g078620.1.1	Tomato	mitochondrion	38.12	37.2
KRH49260	Soybean	cytosol, nucleus, peroxisome	37.62	35.85
KRH00115	Soybean	nucleus	37.13	35.21
PGSC0003DMT400075613	Potato	nucleus	38.12	35.0
KRH00114	Soybean	cytosol	39.11	34.96
PGSC0003DMT400094103	Potato	mitochondrion	36.63	34.74
Solyc12g042390.1.1	Tomato	cytosol	37.13	34.56
KRH00116	Soybean	cytosol	35.64	34.12
PGSC0003DMT400032474	Potato	cytosol, nucleus, vacuole	39.11	33.91
Solyc08g007350.1.1	Tomato	cytosol	38.61	33.19
PGSC0003DMT400036459	Potato	extracellular	35.15	32.87
Solyc01g103460.2.1	Tomato	cytosol	34.65	32.86
KRH49255	Soybean	nucleus	38.61	32.77
PGSC0003DMT400064032	Potato	nucleus	34.65	32.56
PGSC0003DMT400032554	Potato	cytosol	40.1	32.14
GSMUA_Achr1P12990_001	Banana	plastid	28.22	30.0
HORVU7Hr1G098080.1	Barley	nucleus	28.22	28.93
HORVU3Hr1G021110.1	Barley	nucleus	28.22	28.93
KRH00112	Soybean	nucleus	26.73	27.0
HORVU2Hr1G001690.1	Barley	plastid	23.76	20.6

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.2	UniProt:A0A287DX50	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008408	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	EnsemblPlantsGene:HORVU0Hr1G006750	EnsemblPlants:HORVU0Hr1G006750.1
InterPro:IPR036397	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF34	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SUPFAM:SSF53098	UniParc:UPI000B478C6E	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchrUn:+:39086295..39086900

Molecular Weight (calculated)

18682.5 Da

IEP (calculated)

4.366

GRAVY (calculated)

0.171

Length

202 amino acids

Sequence
(BLAST)

001: MATDTFVTDV AFGADVIVTT VTNSGAAVEV WLQEIRSVLG DLVVGIDVEW RPSYGPSQNP VALLQLCVGR RCLIFQLLHA DFVPQALSGF LADPNLRFVG
101: VGVQEDVERL SDDHALEVAN AVDLRGLAAE GMQMPELRQA GLQAVARNVM GANLQKPQRV RMGPWDAYCL SYXXXXXXXX XXXXXXXXXX XXXXXXXXXX
201: XX

Best Arabidopsis Sequence Match ( AT2G36110.1 )
(BLAST)

001: MARIRRRIQK RHIHENRYID FFGERLIVTV THTTSTIRRW IHSIRFFSRL RSSHPLVVGL DVQWTPGGSD PPPDILQLCV GNRCLIIQLS HCKRIPEVLR
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.