Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G268100.1 | Wheat | cytosol, nucleus, plastid | 97.46 | 97.46 |
| TraesCS3D01G239900.1 | Wheat | cytosol, nucleus, plastid | 96.95 | 96.95 |
| HORVU0Hr1G006750.1 | Barley | nucleus | 83.76 | 81.68 |
| TraesCS5A01G007100.1 | Wheat | cytosol | 70.05 | 68.66 |
| TraesCS4A01G026000.1 | Wheat | cytosol | 66.5 | 68.59 |
| Os01t0660800-01 | Rice | nucleus | 69.04 | 68.34 |
| TraesCS7A01G302600.1 | Wheat | cytosol | 71.07 | 66.99 |
| Zm00001d011507_P001 | Maize | cytosol | 67.51 | 65.84 |
| EES03384 | Sorghum | nucleus | 67.01 | 65.35 |
| TraesCS3A01G239500.1 | Wheat | nucleus | 60.91 | 60.0 |
| TraesCS2A01G565200.1 | Wheat | cytosol | 70.05 | 59.48 |
| TraesCS3A01G278600.1 | Wheat | cytosol | 49.75 | 51.04 |
| VIT_08s0040g00710.t01 | Wine grape | cytosol | 48.73 | 46.15 |
| TraesCS6A01G390200.1 | Wheat | nucleus | 45.69 | 45.45 |
| PGSC0003DMT400093830 | Potato | cytosol | 47.21 | 45.37 |
| Solyc10g078200.1.1 | Tomato | nucleus | 46.7 | 44.88 |
| Solyc08g078620.1.1 | Tomato | mitochondrion | 45.18 | 43.0 |
| KRH49260 | Soybean | cytosol, nucleus, peroxisome | 45.69 | 42.45 |
| PGSC0003DMT400094103 | Potato | mitochondrion | 44.67 | 41.31 |
| KRH00115 | Soybean | nucleus | 44.67 | 41.31 |
| PGSC0003DMT400075613 | Potato | nucleus | 45.69 | 40.91 |
| KRH00114 | Soybean | cytosol | 46.7 | 40.71 |
| Solyc12g094540.1.1 | Tomato | cytosol | 42.13 | 40.69 |
| Solyc11g006480.1.1 | Tomato | nucleus | 36.55 | 40.68 |
| KRH00116 | Soybean | cytosol | 43.15 | 40.28 |
| Solyc12g042390.1.1 | Tomato | cytosol | 44.16 | 40.09 |
| PGSC0003DMT400036459 | Potato | extracellular | 43.65 | 39.81 |
| PGSC0003DMT400064032 | Potato | nucleus | 43.15 | 39.53 |
| PGSC0003DMT400032474 | Potato | cytosol, nucleus, vacuole | 46.7 | 39.48 |
| Solyc01g103460.2.1 | Tomato | cytosol | 42.13 | 38.97 |
| Solyc08g007350.1.1 | Tomato | cytosol | 46.19 | 38.72 |
| TraesCS3A01G116100.1 | Wheat | mitochondrion, nucleus, plastid | 39.09 | 38.31 |
| KRH49255 | Soybean | nucleus | 44.67 | 36.97 |
| PGSC0003DMT400032554 | Potato | cytosol | 47.21 | 36.9 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 34.52 | 35.79 |
| KRH00112 | Soybean | nucleus | 32.99 | 32.5 |
| TraesCS1A01G315700.1 | Wheat | mitochondrion | 31.98 | 31.66 |
| TraesCS2A01G011600.1 | Wheat | nucleus | 26.4 | 17.57 |
| TraesCS2A01G262300.1 | Wheat | cytosol, mitochondrion, nucleus | 36.04 | 12.12 |
Protein Annotations
| InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 |
| GO:GO:0009987 | GO:GO:0016787 | InterPro:IPR036397 | PFAM:PF01612 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF34 |
| InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SMART:SM00474 | SUPFAM:SSF53098 | EnsemblPlantsGene:TraesCS3A01G239600 | EnsemblPlants:TraesCS3A01G239600.1 |
| TIGR:cd06141 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:449656335..449656928
Molecular Weight (calculated)
21455.8 Da
IEP (calculated)
4.438
GRAVY (calculated)
0.173
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MATDTFVTDV TFGPDVIVTT VTNSGATVEG WLQEIRSVLG DLVVGIDVEW RPSYGPSQNP VALLQLCVGR RCLIFQLLHA DFVPQALSGF LADPNLRFVG
101: VGVQEDVERL SDDHSLAVAN AVDLRGLAAE GMQMPELRQA GLQAVARTVM GANLQKPQRV RMGPWDAYCL SYDQIKYACI DAFVSFEVGR KLLTGDL
101: VGVQEDVERL SDDHSLAVAN AVDLRGLAAE GMQMPELRQA GLQAVARTVM GANLQKPQRV RMGPWDAYCL SYDQIKYACI DAFVSFEVGR KLLTGDL
001: MARIRRRIQK RHIHENRYID FFGERLIVTV THTTSTIRRW IHSIRFFSRL RSSHPLVVGL DVQWTPGGSD PPPDILQLCV GNRCLIIQLS HCKRIPEVLR
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIH3]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.