Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G026000.1 | Wheat | cytosol | 92.54 | 97.38 |
| TraesCS7A01G302600.1 | Wheat | cytosol | 78.61 | 75.6 |
| TraesCS3A01G239600.1 | Wheat | cytosol | 68.66 | 70.05 |
| TraesCS2A01G565200.1 | Wheat | cytosol | 76.62 | 66.38 |
| Os01t0660800-01 | Rice | nucleus | 64.18 | 64.82 |
| EES03384 | Sorghum | nucleus | 61.69 | 61.39 |
| TraesCS3A01G239500.1 | Wheat | nucleus | 59.7 | 60.0 |
| Zm00001d011507_P001 | Maize | cytosol | 60.2 | 59.9 |
| TraesCS3A01G278600.1 | Wheat | cytosol | 48.76 | 51.04 |
| VIT_08s0040g00710.t01 | Wine grape | cytosol | 48.76 | 47.12 |
| TraesCS6A01G390200.1 | Wheat | nucleus | 45.77 | 46.46 |
| PGSC0003DMT400093830 | Potato | cytosol | 46.77 | 45.85 |
| Solyc10g078200.1.1 | Tomato | nucleus | 46.27 | 45.37 |
| Solyc08g078620.1.1 | Tomato | mitochondrion | 44.28 | 43.0 |
| Solyc01g103460.2.1 | Tomato | cytosol | 44.28 | 41.78 |
| KRH00115 | Soybean | nucleus | 44.28 | 41.78 |
| KRH00114 | Soybean | cytosol | 46.77 | 41.59 |
| Solyc11g006480.1.1 | Tomato | nucleus | 36.32 | 41.24 |
| KRH49260 | Soybean | cytosol, nucleus, peroxisome | 43.28 | 41.04 |
| PGSC0003DMT400064032 | Potato | nucleus | 43.78 | 40.93 |
| Solyc12g042390.1.1 | Tomato | cytosol | 43.78 | 40.55 |
| PGSC0003DMT400094103 | Potato | mitochondrion | 42.79 | 40.38 |
| KRH00116 | Soybean | cytosol | 42.29 | 40.28 |
| PGSC0003DMT400075613 | Potato | nucleus | 43.78 | 40.0 |
| Solyc12g094540.1.1 | Tomato | cytosol | 40.3 | 39.71 |
| PGSC0003DMT400036459 | Potato | extracellular | 42.29 | 39.35 |
| PGSC0003DMT400032474 | Potato | cytosol, nucleus, vacuole | 45.27 | 39.06 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 36.32 | 38.42 |
| TraesCS3A01G116100.1 | Wheat | mitochondrion, nucleus, plastid | 38.31 | 38.31 |
| Solyc08g007350.1.1 | Tomato | cytosol | 44.78 | 38.3 |
| PGSC0003DMT400032554 | Potato | cytosol | 45.77 | 36.51 |
| KRH49255 | Soybean | nucleus | 41.79 | 35.29 |
| TraesCS1A01G315700.1 | Wheat | mitochondrion | 31.84 | 32.16 |
| KRH00112 | Soybean | nucleus | 30.35 | 30.5 |
| TraesCS2A01G011600.1 | Wheat | nucleus | 26.87 | 18.24 |
| TraesCS2A01G262300.1 | Wheat | cytosol, mitochondrion, nucleus | 34.33 | 11.77 |
Protein Annotations
| InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 |
| GO:GO:0009987 | GO:GO:0016787 | InterPro:IPR036397 | PFAM:PF01612 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF34 |
| InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SMART:SM00474 | SUPFAM:SSF53098 | EnsemblPlantsGene:TraesCS5A01G007100 | EnsemblPlants:TraesCS5A01G007100.1 |
| TIGR:cd06141 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:4080763..4081368
Molecular Weight (calculated)
22419.7 Da
IEP (calculated)
5.559
GRAVY (calculated)
-0.005
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MATETLVGDV DFEGDVITTT ITSSGAAVAA WLRKIRYVYR WVYHKLIVGL DVEWRPSYSH AQNPVALQQL CVGRRCLIFQ LLHADYFPQA LVTFLADPDF
101: RFVGIGVQDD ANRLSNDHGL GVANTVDLRH LAADEMGKPW LRQAGLRDVA DAVMGASVDK PHSITMGPWD AYRLSDEQIK YACIDAFVSF EVGRKLLTGD
201: Y
101: RFVGIGVQDD ANRLSNDHGL GVANTVDLRH LAADEMGKPW LRQAGLRDVA DAVMGASVDK PHSITMGPWD AYRLSDEQIK YACIDAFVSF EVGRKLLTGD
201: Y
001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.