Factsheet for TraesCS7B01G202700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
plasma membrane 1
vacuole 1
golgi 1
extracellular 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G297900.1	Wheat	cytosol	85.58	95.19
TraesCS7A01G302600.1	Wheat	cytosol	94.23	93.78
HORVU7Hr1G071770.1	Barley	cytosol	87.5	85.85
TraesCS3B01G268100.1	Wheat	cytosol, nucleus, plastid	66.35	70.05
TraesCS2B01G625700.1	Wheat	cytosol	77.4	69.1
Os01t0660800-01	Rice	nucleus	61.54	64.32
Zm00001d011507_P001	Maize	cytosol	59.13	60.89
EES03384	Sorghum	nucleus	58.65	60.4
TraesCS3B01G312800.1	Wheat	nucleus	51.92	51.92
TraesCS6B01G430200.1	Wheat	cytosol	48.08	50.0
PGSC0003DMT400093830	Potato	cytosol	47.12	47.8
Solyc10g078200.1.1	Tomato	nucleus	46.63	47.32
VIT_08s0040g00710.t01	Wine grape	cytosol	46.63	46.63
KRH00115	Soybean	nucleus	44.71	43.66
Solyc08g078620.1.1	Tomato	mitochondrion	43.27	43.48
Solyc01g103460.2.1	Tomato	cytosol	43.27	42.25
KRH49260	Soybean	cytosol, nucleus, peroxisome	42.79	41.98
PGSC0003DMT400064032	Potato	nucleus	43.27	41.86
Solyc11g006480.1.1	Tomato	nucleus	35.58	41.81
TraesCS3B01G135200.1	Wheat	nucleus, peroxisome, plastid	39.9	41.5
Solyc12g094540.1.1	Tomato	cytosol	40.38	41.18
KRH00116	Soybean	cytosol	41.35	40.76
KRH00114	Soybean	cytosol	44.23	40.71
PGSC0003DMT400075613	Potato	nucleus	42.79	40.45
PGSC0003DMT400094103	Potato	mitochondrion	41.35	40.38
TraesCS3B01G267900.1	Wheat	cytosol	47.12	39.84
PGSC0003DMT400032474	Potato	cytosol, nucleus, vacuole	43.75	39.06
PGSC0003DMT400036459	Potato	extracellular	40.38	38.89
Solyc08g007350.1.1	Tomato	cytosol	43.27	38.3
Solyc12g042390.1.1	Tomato	cytosol	39.9	38.25
GSMUA_Achr1P12990_001	Banana	plastid	33.17	36.32
PGSC0003DMT400032554	Potato	cytosol	43.75	36.11
KRH49255	Soybean	nucleus	40.87	35.71
TraesCS1B01G327900.1	Wheat	mitochondrion	31.73	33.17
KRH00112	Soybean	nucleus	29.81	31.0
TraesCS2B01G010000.1	Wheat	nucleus	26.44	18.64
TraesCS2B01G279800.1	Wheat	mitochondrion, plastid	0.48	0.33

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408
GO:GO:0009987	GO:GO:0016787	InterPro:IPR036397	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF34
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS7B01G202700	EnsemblPlants:TraesCS7B01G202700.1	TIGR:cd06141

Description

No Description!

Coordinates

chr7B:+:372008150..372008776

Molecular Weight (calculated)

23579.2 Da

IEP (calculated)

6.781

GRAVY (calculated)

-0.144

Length

208 amino acids

Sequence
(BLAST)

001: MAAEKLVTSV DFEDDVITAT VTSSGDAVKA WLRQIRYVYR WVYHKLIVGL DVEWRPSYGR AQNPVALLQL CVGRRCLVFQ LLHADFVPRA LHRFLANPDF
101: RFVGVGVQDD ADRLSNDYGL EVANAVDLRN LAADEMRRPW LRQAGLKGVA GVVMGANLNK PRRVRMGPWD ACRLSQEQIQ YASIDAFVLF EVGRKLLTGD
201: YSSEEEDY

Best Arabidopsis Sequence Match ( AT3G12410.1 )
(BLAST)

001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.