Factsheet for Os04t0225100-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01441	Sorghum	cytosol, nucleus, plastid	79.62	80.0
Zm00001d043554_P001	Maize	cytosol	70.14	72.55
Os01t0737600-00	Rice	cytosol	63.98	64.9
Os01t0737700-00	Rice	nucleus	60.66	54.7
Os01t0660800-01	Rice	nucleus	49.29	52.26
VIT_08s0040g00710.t01	Wine grape	cytosol	43.6	44.23
KRH00115	Soybean	nucleus	43.6	43.19
Solyc10g078200.1.1	Tomato	nucleus	41.23	42.44
PGSC0003DMT400093830	Potato	cytosol	41.23	42.44
Os11t0222320-00	Rice	cytosol, nucleus	27.01	42.22
KRH00116	Soybean	cytosol	41.71	41.71
Solyc08g078620.1.1	Tomato	mitochondrion	40.28	41.06
KRH49260	Soybean	cytosol, nucleus, peroxisome	40.76	40.57
Solyc11g006480.1.1	Tomato	nucleus	33.65	40.11
KRH00114	Soybean	cytosol	42.18	39.38
Solyc01g103460.2.1	Tomato	cytosol	38.86	38.5
PGSC0003DMT400094103	Potato	mitochondrion	38.39	38.03
Os01t0300000-01	Rice	nucleus	36.02	37.81
KRH49255	Soybean	nucleus	42.18	37.4
PGSC0003DMT400064032	Potato	nucleus	37.91	37.21
GSMUA_Achr1P12990_001	Banana	plastid	33.18	36.84
Solyc12g042390.1.1	Tomato	cytosol	37.44	36.41
PGSC0003DMT400075613	Potato	nucleus	37.91	36.36
Solyc12g094540.1.1	Tomato	cytosol	35.07	36.27
Solyc08g007350.1.1	Tomato	cytosol	40.28	36.17
PGSC0003DMT400032474	Potato	cytosol, nucleus, vacuole	38.86	35.19
PGSC0003DMT400036459	Potato	extracellular	35.55	34.72
Os07t0112300-00	Rice	mitochondrion	18.96	34.48
KRH00112	Soybean	nucleus	31.28	33.0
PGSC0003DMT400032554	Potato	cytosol	39.34	32.94
Os01t0299700-01	Rice	cytosol, peroxisome	32.23	28.69
Os01t0660500-00	Rice	mitochondrion	43.13	23.27
Os04t0129200-00	Rice	nucleus	28.44	20.13
Os07t0112400-00	Rice	mitochondrion	33.65	14.31

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.2	EntrezGene:4335211	ProteinID:BAF14193.1	ProteinID:BAS88198.1
ProteinID:CAD39842.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305
InterPro:IPR036397	EnsemblPlantsGene:Os04g0225100	EnsemblPlants:Os04t0225100-01	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF14
UniProt:Q7XWZ1	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098	UniParc:UPI00001B0D89
RefSeq:XP_015635093.1	SEG:seg	:	:	:	:

Description

3'-5' exonuclease domain containing protein. (Os04t0225100-01)

Coordinates

chr4:-:8320595..8321435

Molecular Weight (calculated)

23495.0 Da

IEP (calculated)

6.352

GRAVY (calculated)

-0.154

Length

211 amino acids

Sequence
(BLAST)

001: MATEIEAYYD DGSGTYLLSF DEDFFDATLT KSGGKVESWL GETYRIHRSC GHPLVVGLDV EWRPAAPVPG PVAVLQLCVD RRCLVFQILH ADYVPDALSR
101: FLADPRFTFV GVGVRDDAAR LRVGYGLEVP RAVDLRALAA DTLGRPDLRR AGLRALVREV MGVQMDKPHH VRVSAWDKRN LSEDQFKYAC ADAFASREVG
201: RRLYTCNCDG A

Best Arabidopsis Sequence Match ( AT3G12410.1 )
(BLAST)

001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.