Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d010107_P001 | Maize | nucleus | 92.18 | 37.8 |
| Zm00001d043554_P001 | Maize | cytosol | 16.35 | 33.82 |
| TraesCS6A01G390200.1 | Wheat | nucleus | 15.4 | 32.83 |
| Zm00001d043985_P001 | Maize | cytosol, nucleus, plastid | 15.4 | 32.5 |
| Zm00001d011507_P001 | Maize | cytosol | 15.4 | 32.18 |
| VIT_08s0040g00710.t01 | Wine grape | cytosol | 15.64 | 31.73 |
| Solyc10g078200.1.1 | Tomato | nucleus | 15.4 | 31.71 |
| Solyc01g103460.2.1 | Tomato | cytosol | 15.64 | 30.99 |
| PGSC0003DMT400093830 | Potato | cytosol | 14.93 | 30.73 |
| PGSC0003DMT400064032 | Potato | nucleus | 15.64 | 30.7 |
| PGSC0003DMT400094103 | Potato | mitochondrion | 15.4 | 30.52 |
| Solyc08g078620.1.1 | Tomato | mitochondrion | 14.93 | 30.43 |
| KRH49260 | Soybean | cytosol, nucleus, peroxisome | 15.17 | 30.19 |
| KRH00114 | Soybean | cytosol | 15.88 | 29.65 |
| KRH00115 | Soybean | nucleus | 14.69 | 29.11 |
| Zm00001d009130_P001 | Maize | nucleus | 14.69 | 28.97 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 13.03 | 28.95 |
| KRH00116 | Soybean | cytosol | 14.22 | 28.44 |
| Solyc11g006480.1.1 | Tomato | nucleus | 11.61 | 27.68 |
| Solyc12g042390.1.1 | Tomato | cytosol | 14.22 | 27.65 |
| Solyc12g094540.1.1 | Tomato | cytosol | 13.27 | 27.45 |
| KRH49255 | Soybean | nucleus | 15.4 | 27.31 |
| PGSC0003DMT400075613 | Potato | nucleus | 13.98 | 26.82 |
| Solyc08g007350.1.1 | Tomato | cytosol | 13.98 | 25.11 |
| PGSC0003DMT400036459 | Potato | extracellular | 12.8 | 25.0 |
| PGSC0003DMT400032474 | Potato | cytosol, nucleus, vacuole | 13.74 | 24.89 |
| PGSC0003DMT400032554 | Potato | cytosol | 13.74 | 23.02 |
| KRH00112 | Soybean | nucleus | 10.66 | 22.5 |
| Zm00001d018645_P001 | Maize | mitochondrion | 13.74 | 21.4 |
| Zm00001d011513_P001 | Maize | plastid | 18.72 | 18.12 |
| Zm00001d004468_P003 | Maize | nucleus | 12.32 | 17.16 |
| Zm00001d036734_P001 | Maize | nucleus | 10.9 | 17.1 |
| Zm00001d047288_P001 | Maize | nucleus | 8.06 | 16.83 |
Protein Annotations
| InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.2 | UniProt:A0A1D6IJ41 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008408 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016787 | GO:GO:0090305 | InterPro:IPR036397 |
| ProteinID:ONM59482.1 | PFAM:PF01612 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF13 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf |
| SMART:SM00474 | SUPFAM:SSF53098 | UniParc:UPI00084253A5 | EnsemblPlantsGene:Zm00001d022094 | EnsemblPlants:Zm00001d022094_P001 | EnsemblPlants:Zm00001d022094_T001 |
Description
Polynucleotidyl transferase ribonuclease H-like superfamily protein
Coordinates
chr7:+:170166869..170168137
Molecular Weight (calculated)
47005.9 Da
IEP (calculated)
6.694
GRAVY (calculated)
-0.563
Length
422 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSSSSPKEK EAMLPAVTTH EKQGADSSIP CPRNSTSTKS FPPPNRGSQP HGKQGTEVAE GINCDPSCFM DQHKMIIVGK SEVQVTVTSA TMTVERFLRD
101: VRGEEPKPLI VGLDTEWFEN DRKKIALIQI CVDKKCLLFK VNIAGDIPDN LKSFLADEDH VFVGVAIAND LDRLRESHQI ELSNKVELQA MAPFIISDRQ
201: WNNVPSLATL AQELLGVAIG GKGTDVRYKH WDNKQLTENQ IKYACTDAAV PYMVGDMIQK EYGCDLHVTQ FPYPSTNFMD NNEDGEEVQR SQLHFVEDPQ
301: TKRIKTCPAC PAGAKQKNRM WNEVISHVVS QAASEKGSED NRKRHKCLLR NHGFHVDTSD DSGGSNPQER GEAVPRHPAN QEKAMTMENS LSSTKSRLRV
401: QAPKCIPMLW SIVPAMVNLN IN
101: VRGEEPKPLI VGLDTEWFEN DRKKIALIQI CVDKKCLLFK VNIAGDIPDN LKSFLADEDH VFVGVAIAND LDRLRESHQI ELSNKVELQA MAPFIISDRQ
201: WNNVPSLATL AQELLGVAIG GKGTDVRYKH WDNKQLTENQ IKYACTDAAV PYMVGDMIQK EYGCDLHVTQ FPYPSTNFMD NNEDGEEVQR SQLHFVEDPQ
301: TKRIKTCPAC PAGAKQKNRM WNEVISHVVS QAASEKGSED NRKRHKCLLR NHGFHVDTSD DSGGSNPQER GEAVPRHPAN QEKAMTMENS LSSTKSRLRV
401: QAPKCIPMLW SIVPAMVNLN IN
001: MARIRRRIQK RHIHENRYID FFGERLIVTV THTTSTIRRW IHSIRFFSRL RSSHPLVVGL DVQWTPGGSD PPPDILQLCV GNRCLIIQLS HCKRIPEVLR
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIH3]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.