Factsheet for Zm00001d010107_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022094_P001	Maize	nucleus	37.8	92.18
Zm00001d043554_P001	Maize	cytosol	6.61	33.33
TraesCS6A01G390200.1	Wheat	nucleus	6.12	31.82
VIT_08s0040g00710.t01	Wine grape	cytosol	6.41	31.73
Zm00001d043985_P001	Maize	cytosol, nucleus, plastid	6.12	31.5
Solyc10g078200.1.1	Tomato	nucleus	6.22	31.22
Zm00001d011507_P001	Maize	cytosol	6.12	31.19
KRH49260	Soybean	cytosol, nucleus, peroxisome	6.32	30.66
PGSC0003DMT400094103	Potato	mitochondrion	6.32	30.52
Solyc01g103460.2.1	Tomato	cytosol	6.22	30.05
PGSC0003DMT400064032	Potato	nucleus	6.22	29.77
PGSC0003DMT400093830	Potato	cytosol	5.93	29.76
KRH00114	Soybean	cytosol	6.51	29.65
Solyc08g078620.1.1	Tomato	mitochondrion	5.93	29.47
KRH00116	Soybean	cytosol	6.03	29.38
KRH00115	Soybean	nucleus	5.93	28.64
Zm00001d009130_P001	Maize	nucleus	5.93	28.5
GSMUA_Achr1P12990_001	Banana	plastid	5.25	28.42
KRH49255	Soybean	nucleus	6.41	27.73
Solyc11g006480.1.1	Tomato	nucleus	4.76	27.68
Solyc12g094540.1.1	Tomato	cytosol	5.44	27.45
PGSC0003DMT400075613	Potato	nucleus	5.73	26.82
Solyc12g042390.1.1	Tomato	cytosol	5.64	26.73
Solyc08g007350.1.1	Tomato	cytosol	6.03	26.38
PGSC0003DMT400036459	Potato	extracellular	5.34	25.46
PGSC0003DMT400032554	Potato	cytosol	6.22	25.4
PGSC0003DMT400032474	Potato	cytosol, nucleus, vacuole	5.64	24.89
KRH00112	Soybean	nucleus	4.28	22.0
Zm00001d018645_P001	Maize	mitochondrion	5.54	21.03
Zm00001d011513_P001	Maize	plastid	8.26	19.5
Zm00001d004468_P003	Maize	nucleus	5.15	17.49
Zm00001d036734_P001	Maize	nucleus	4.28	16.36
Zm00001d047288_P001	Maize	nucleus	3.21	16.34

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.2	UniProt:A0A1D6FP71	ProteinID:AQK93429.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987	GO:GO:0016740	GO:GO:0016787
GO:GO:0090305	InterPro:IPR036397	PFAM:PF01612	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474
SUPFAM:SSF53098	UniParc:UPI0008433DA4	EnsemblPlantsGene:Zm00001d010107	EnsemblPlants:Zm00001d010107_P001	EnsemblPlants:Zm00001d010107_T001	SEG:seg

Description

Polynucleotidyl transferase ribonuclease H-like superfamily protein

Coordinates

chr8:-:99290611..99294991

Molecular Weight (calculated)

113830.0 Da

IEP (calculated)

7.931

GRAVY (calculated)

-0.713

Length

1029 amino acids

Sequence
(BLAST)

0001: MGFLYEGMAA RVQDFVTIRF GSMWVDVPMG PIQASNSAGS LQTTATSPAV VAHDQEVNSK AEEGFTPVMS KVAKRRARRV IAKARVAATN ECAANWHKAT
0101: PTNSTPDSSK YKGAKPSSFM MTPKLFHPIT LGEWPICARK APPTKSTVLM VSSSSPKEKE AMPPAVTHEK QGSDSSTPSP SILGAPPRNS TSTKSFPPPN
0201: GGIVLQDQPQ GSQPHGKQGT EVAEEINRPR PIDKRKAVMA ESDSLPKLHS DPSCFTDQHK MIIVGKSEVQ VAVTSATMTV ERFLRDVRGE EPKPLIVGLD
0301: TEWFENDRKR IALIQICVDK KCLLFKVGIA GDIPDNLKSF LADEDHVFVG VAIANDLDRL REGHQIELSN KVELQAMAPF IISDRQWNNV PSLATLAQEL
0401: LGVAIGGKGT NVRYKHWDNK QLTENQIKYA CTDVVVPYMV GDMIQKEYGC DLHVTQSPYP STNSMDNNED GEVQRSQLHF VEDPQTKRIK TCPACPAGAK
0501: QKNRMWNEVI SHVVSQAASE KGSEDNRRRH KCLLRNHGFH VETSDDSGSN PEERGEAVEE INPRHPANEE KAMTMENSLS STDSDSSTKS RLRVEAPEFI
0601: PMLVHNPSNG QPKYELRWQG LHLSFNDITR GHVDPAASIS DPISSEVVVS WPSAQNSTSP KRRRRRQRNI HKAWANFNNS IDSLTNAQRA YVADSILAQQ
0701: RGEYRRIQNA AMQAFQASIE RTICQDLRSL LPGASTSSDN VEGELMRRAK ALAKLPEHHE FIKKDPRRRK YAKQAANVCA RRASLKQREL AIPTNSMASK
0801: AQRGVSSNHA GGKTIVPYLP PHKRALSNRF EVLSSMPVSV EEEGCNTSDA SSTSAHFKRK KPRKQVPMGH RPVTRSLTNS GNSENNMIYV GSYNPLFDDH
0901: SNFENKSLDV ADSTNLNPSS GEDPQTATDD DLRSPHSEGE PSESERDAEQ VLTTNQGQSV EEQMNQMMAA LQQKEEELAA LRIHNSKLSA SMKARLSYDG
1001: STPQKVDHQV PKDQESVNSN SQDDLLSNE

Best Arabidopsis Sequence Match ( AT2G36110.1 )
(BLAST)

001: MARIRRRIQK RHIHENRYID FFGERLIVTV THTTSTIRRW IHSIRFFSRL RSSHPLVVGL DVQWTPGGSD PPPDILQLCV GNRCLIIQLS HCKRIPEVLR
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.