Factsheet for PGSC0003DMT400092627

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400087534	Potato	cytosol, nucleus, plastid	70.87	92.41
Solyc01g100670.1.1	Tomato	cytosol	71.84	90.24
PGSC0003DMT400016348	Potato	nucleus	62.62	61.72
KRH26003	Soybean	nucleus	47.09	46.63
KRH63674	Soybean	cytosol	35.44	44.24
TraesCS3B01G135200.1	Wheat	nucleus, peroxisome, plastid	42.72	44.0
Os01t0300000-01	Rice	nucleus	42.72	43.78
TraesCS3D01G118000.1	Wheat	nucleus, peroxisome, plastid	42.23	43.5
Zm00001d009130_P001	Maize	nucleus	45.15	43.46
TraesCS3A01G116100.1	Wheat	mitochondrion, nucleus, plastid	41.26	42.29
KXG32361	Sorghum	mitochondrion	43.2	40.64
PGSC0003DMT400094103	Potato	mitochondrion	38.35	37.09
HORVU7Hr1G098080.1	Barley	nucleus	34.95	36.55
HORVU3Hr1G021110.1	Barley	nucleus	34.95	36.55
PGSC0003DMT400093830	Potato	cytosol	35.44	35.61
PGSC0003DMT400064032	Potato	nucleus	35.44	33.95
PGSC0003DMT400032474	Potato	cytosol, nucleus, vacuole	37.86	33.48
PGSC0003DMT400036459	Potato	extracellular	33.98	32.41
PGSC0003DMT400075613	Potato	nucleus	34.47	32.27
Os01t0299700-01	Rice	cytosol, peroxisome	33.98	29.54
PGSC0003DMT400032554	Potato	cytosol	35.92	29.37
PGSC0003DMT400053073	Potato	nucleus	26.21	17.94

Protein Annotations

EntrezGene:107060106	InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008408	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR036397	UniProt:M1DQ76
PFAM:PF01612	EnsemblPlantsGene:PGSC0003DMG400042198	PGSC:PGSC0003DMG400042198	EnsemblPlants:PGSC0003DMT400092627	PANTHER:PTHR13620	PANTHER:PTHR13620:SF34
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098	UniParc:UPI000295FAD0	RefSeq:XP_015162977.1
SEG:seg	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400042198]

Coordinates

chr1:+:78330561..78331181

Molecular Weight (calculated)

23298.7 Da

IEP (calculated)

8.179

GRAVY (calculated)

-0.352

Length

206 amino acids

Sequence
(BLAST)

001: MYSSYSSTRS DTTTKYHINF GGQTIETTVT NKAFVANEWA TSMLSKYSGK QTVVGLDNEW KPNFSPYTNN KSATLQLCID NTCLIVQLFY LDEIPQTLKK
101: FLANPNFTFV GVEVGEDILK LKNQYGLVCS SQVDIRDVAK NKWPGRFSRP GLKDLANEIC GLYMPKPKHV SMSNWEAREL SVSQVEYACI DAYASYKIGH
201: KLLMEN

Best Arabidopsis Sequence Match ( AT3G12410.1 )
(BLAST)

001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.