Factsheet for PGSC0003DMT400016348

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g076930.1.1	Tomato	cytosol, nucleus, plastid	55.02	88.46
VIT_14s0060g00990.t01	Wine grape	nucleus	76.08	75.71
VIT_14s0060g01000.t01	Wine grape	nucleus	55.5	74.36
PGSC0003DMT400087534	Potato	cytosol, nucleus, plastid	51.67	68.35
PGSC0003DMT400092627	Potato	nucleus	61.72	62.62
KRH26003	Soybean	nucleus	46.89	47.12
Os01t0300000-01	Rice	nucleus	43.54	45.27
KRH63674	Soybean	cytosol	34.45	43.64
Zm00001d009130_P001	Maize	nucleus	43.54	42.52
TraesCS3D01G118000.1	Wheat	nucleus, peroxisome, plastid	39.71	41.5
TraesCS3B01G135200.1	Wheat	nucleus, peroxisome, plastid	39.71	41.5
KXG32361	Sorghum	mitochondrion	43.06	41.1
TraesCS3A01G116100.1	Wheat	mitochondrion, nucleus, plastid	39.23	40.8
PGSC0003DMT400093830	Potato	cytosol	37.8	38.54
PGSC0003DMT400094103	Potato	mitochondrion	38.76	38.03
HORVU7Hr1G098080.1	Barley	nucleus	33.01	35.03
HORVU3Hr1G021110.1	Barley	nucleus	33.01	35.03
PGSC0003DMT400064032	Potato	nucleus	35.41	34.42
PGSC0003DMT400075613	Potato	nucleus	35.41	33.64
PGSC0003DMT400032474	Potato	cytosol, nucleus, vacuole	35.41	31.76
Os01t0299700-01	Rice	cytosol, peroxisome	34.45	30.38
PGSC0003DMT400036459	Potato	extracellular	30.62	29.63
PGSC0003DMT400032554	Potato	cytosol	33.49	27.78
PGSC0003DMT400053073	Potato	nucleus	23.92	16.61

Protein Annotations

EntrezGene:102594853	InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008408	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR036397	UniProt:M1A7I8
PFAM:PF01612	EnsemblPlantsGene:PGSC0003DMG400006389	PGSC:PGSC0003DMG400006389	EnsemblPlants:PGSC0003DMT400016348	PANTHER:PTHR13620	PANTHER:PTHR13620:SF34
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098	UniParc:UPI000295C6DE	RefSeq:XP_006364967.1

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400006389]

Coordinates

chr4:+:65814844..65815473

Molecular Weight (calculated)

23680.3 Da

IEP (calculated)

6.120

GRAVY (calculated)

-0.269

Length

209 amino acids

Sequence
(BLAST)

001: MHSFNNPNGI TYNPTTSNYS VTFAGKTIET TVTDNGAVAD EWVRNILSIH GNTPMVVVGL DIEWRPHEIS WMSNKSATLQ LCIDEKCLIL QLFYVDEIPE
101: SLKDFLNSTN FTFVGIEVAD DVKKLKNEYG LNCCKSADIR AMAKQRWPGR FRRPGLKDLA LEIAGLNMKK PKHVCMSNWE ARELSSDQVE YACLDAYASY
201: KIGYKLLLE

Best Arabidopsis Sequence Match ( AT3G12410.1 )
(BLAST)

001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.