Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038722.1-P | Field mustard | cytosol | 93.94 | 71.43 |
| CDY50341 | Canola | cytosol | 73.94 | 55.45 |
| CDY50339 | Canola | plastid | 46.67 | 43.02 |
| CDY50548 | Canola | cytosol | 56.36 | 41.52 |
| CDY50545 | Canola | cytosol, nucleus, plastid | 56.97 | 40.52 |
| CDY71159 | Canola | cytosol | 56.36 | 36.33 |
| KRH36952 | Soybean | cytosol | 33.33 | 26.7 |
| KRH11911 | Soybean | nucleus | 33.94 | 24.56 |
| Os07t0112300-00 | Rice | mitochondrion | 16.36 | 23.28 |
| TraesCS1D01G315900.1 | Wheat | mitochondrion | 24.85 | 20.6 |
| TraesCS1A01G315700.1 | Wheat | mitochondrion | 24.24 | 20.1 |
| EES02313 | Sorghum | mitochondrion, plastid | 27.88 | 19.01 |
| Zm00001d018645_P001 | Maize | mitochondrion | 24.24 | 14.76 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 16.36 | 14.21 |
| OQU88309 | Sorghum | mitochondrion | 20.61 | 13.93 |
| CDY01171 | Canola | nucleus | 19.39 | 11.64 |
| CDY50420 | Canola | nucleus | 18.18 | 10.91 |
| EER95744 | Sorghum | nucleus | 26.67 | 9.03 |
| Os07t0112400-00 | Rice | mitochondrion | 26.67 | 8.87 |
| TraesCS2A01G262300.1 | Wheat | cytosol, mitochondrion, nucleus | 29.7 | 8.36 |
| TraesCS2D01G261700.1 | Wheat | cytosol, mitochondrion, nucleus | 27.88 | 8.0 |
| TraesCS2B01G279800.1 | Wheat | mitochondrion, plastid | 1.21 | 0.66 |
Protein Annotations
| EnsemblPlants:CDY50340 | EnsemblPlantsGene:GSBRNA2T00096454001 | Gene3D:3.30.420.10 | GO:A0A078IHC1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF8 |
| ProteinID:CDY50340 | ProteinID:CDY50340.1 | SEG:seg | SUPFAM:SSF53098 | UniParc:UPI0004EF1452 | UniProt:A0A078IHC1 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC01g38350DBnaC01g38350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHC1]
Coordinates
chrLK032902:-:30905..31564
Molecular Weight (calculated)
19269.1 Da
IEP (calculated)
9.073
GRAVY (calculated)
-0.450
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPTIKTMGE YKSHQVYFIN FFEQNLDVTQ TETPSIIRRW IRDVVYRHRH RRSRSSHPLV VGVGVQWTPS CQDVRKLEIT RHQLEIGELL DVRKYVADQQ
101: GRSLRGRSFE GIVEECMGLE GVKLDRKISK SDWSVDYLSK EQLVQVSVDA YVSFKLGVDA RLWEV
101: GRSLRGRSFE GIVEECMGLE GVKLDRKISK SDWSVDYLSK EQLVQVSVDA YVSFKLGVDA RLWEV
001: MAPTIKRIRS FRTHQKHFVD FFGDDLIVTV TPTASVIRRW IRSVRSYNRN HSVHPLVVGI GVQWRPDSSD PDPPPKTLQL CVGSRCLIIQ LGYNYGLPKV
101: LRTFLADPKT TFVGVWNGQD QKKLEKCRHR VEIGKLLDIR MFVRDSRGAR MCFCSFEQIV KERLGRVGVR LDPAICMSDW GVYNLNHYQV LQASIESYVC
201: FKLAVEERLW NLKVAANLVI
101: LRTFLADPKT TFVGVWNGQD QKKLEKCRHR VEIGKLLDIR MFVRDSRGAR MCFCSFEQIV KERLGRVGVR LDPAICMSDW GVYNLNHYQV LQASIESYVC
201: FKLAVEERLW NLKVAANLVI
Arabidopsis Description
At3g12470 [Source:UniProtKB/TrEMBL;Acc:Q9LHG1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.