Factsheet for Bra020773.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24715	Canola	mitochondrion	98.9	98.9
AT3G06140.1	Thale cress	mitochondrion	76.03	76.88
Bra002208.1-P	Field mustard	mitochondrion, nucleus	60.06	58.29
HORVU1Hr1G062460.2	Barley	cytosol, nucleus	30.58	53.88
KRH51029	Soybean	mitochondrion	49.86	53.87
TraesCS1B01G258900.1	Wheat	cytosol	33.61	53.51
Solyc01g080080.2.1	Tomato	nucleus	22.59	52.56
GSMUA_Achr3P09070_001	Banana	cytosol	38.84	51.27
KRH20904	Soybean	mitochondrion	50.41	49.33
KRH02118	Soybean	cytosol, mitochondrion	37.47	49.28
KRH11381	Soybean	mitochondrion	49.86	48.53
EES19487	Sorghum	nucleus	45.18	48.24
VIT_05s0020g02680.t01	Wine grape	mitochondrion	51.79	47.96
PGSC0003DMT400073576	Potato	plastid	49.86	47.01
Zm00001d038127_P001	Maize	nucleus	41.6	44.94
Os05t0397650-00	Rice	nucleus	42.98	43.94
Bra003133.1-P	Field mustard	nucleus	34.71	43.6
Bra009546.1-P	Field mustard	cytosol	32.51	39.73
Bra029788.1-P	Field mustard	nucleus, plastid	40.5	38.58
Bra028846.1-P	Field mustard	cytosol	27.82	37.97
Bra034086.1-P	Field mustard	nucleus, plastid	38.02	37.2

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra020773	EnsemblPlants:Bra020773.1	EnsemblPlants:Bra020773.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	UniProt:M4DW79
PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0002545D92	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

AT3G06140 (E=8e-145) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA02:-:23188027..23189569

Molecular Weight (calculated)

41308.8 Da

IEP (calculated)

6.452

GRAVY (calculated)

-0.582

Length

363 amino acids

Sequence
(BLAST)

001: MGISFSINRR RQSNRRHLLH HHPPPPYYYL DPPPPPQPFP PHYDYNYSTY HIPPPLPPPP QINSCSYGHP YHYYPQHPQY LTTAQPNWWG PTMRPGFVCP
101: PQPQTQMQPL PPPYVENQNA KKVRNDVNVH RDTVRLEVDD LVPGHHLVSF DFDAIFHGSF TITFFAKEEP NCTFIPQFPE VYPPTRFSFQ KGPGQRFLQP
201: SGTGTDLSFF ALDDLSKPLE EDVYPLVISA ETLISPNPIS EQSSVHKQVT QAVLEKDSDG SFKVKVVKQI LWIEGVRYEL RELYGSTTQG ASSGLEDGGS
301: GKECVICMTE AKDTAVLPCR HLCMCSDCAK ELRLQSNKCP ICRHPIEELL EINVNSSDEQ HFT

Best Arabidopsis Sequence Match ( AT3G06140.1 )
(BLAST)

001: MGISFSNNNR RRDNNNRRHL HHYPPPPPYY YLDPPPPPPP FPPHYDYNYS NYHLSPPLPP QPQINSCSYG HYHYHPQPPQ YFTTAQPNWW GPMMRPAYYC
101: PPQPQTQPPK PYLEQQNAKK VRNDVNVHRD TVRLEVDDLV PGHHLVSFVF DALFDGSFTI TFFAKEEPNC TIIPQFPEVY SPTRFHFQKG PGQKFLQPSG
201: TGTDLSFFVL DDLSKPLEED VYPLVISAET IISPNSISEQ SSVHKQVTQA VLEKDNDGSF KVKVVKQILW IEGVRYELRE LYGSTTQGAA SGLDESGSGT
301: ECVICMTEAK DTAVLPCRHL CMCSDCAKEL RLQSNKCPIC RQPIEELLEI KMNSSDEQH

Arabidopsis Description

LUL4Probable E3 ubiquitin-protein ligase LUL4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LA32]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.