Factsheet for Bra003133.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
nucleus 4
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002705.1-P
Bra002707.1-P
Bra006808.1-P
Bra012351.1-P
Bra013917.1-P
Bra019142.1-P
Bra020422.1-P
Bra024548.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53410.1	Bra012351.1-P	AT1G22920.1	21798944
AT3G53410.1	Bra024548.1-P	AT1G22920.1	21798944
AT3G53410.1	Bra013917.1-P	AT4G25760.1	22291198
AT3G53410.1	Bra019142.1-P	AT4G25760.1	22291198
AT3G53410.1	Bra002705.1-P	AT5G57685.1	22291198
AT3G53410.1	Bra002707.1-P	AT5G57685.1	22291198
AT3G53410.1	Bra006808.1-P	AT5G57685.1	22291198
AT3G53410.1	Bra020422.1-P	AT5G57685.1	22291198

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67386	Canola	cytosol	99.65	99.65
AT3G53410.1	Thale cress	cytosol	70.59	68.23
Zm00001d015671_P001	Maize	cytosol	40.48	52.0
GSMUA_Achr11P...	Banana	cytosol	52.94	51.69
GSMUA_Achr5P14690_001	Banana	cytosol	52.94	49.84
GSMUA_Achr7P01960_001	Banana	cytosol	51.9	49.02
KRH19856	Soybean	nucleus	57.79	47.85
PGSC0003DMT400027153	Potato	nucleus, plastid	52.25	47.63
KRH32464	Soybean	plastid	57.44	47.56
Solyc10g084100.1.1	Tomato	nucleus, plastid	51.56	46.71
Solyc10g086080.1.1	Tomato	nucleus	53.29	45.97
TraesCS7B01G390000.1	Wheat	mitochondrion	43.6	45.65
Solyc09g007700.2.1	Tomato	plastid	56.75	45.3
PGSC0003DMT400004461	Potato	plastid	56.75	45.18
PGSC0003DMT400045328	Potato	plastid	54.67	45.14
Bra028846.1-P	Field mustard	cytosol	41.52	45.11
Bra034086.1-P	Field mustard	nucleus, plastid	57.79	45.01
Bra009546.1-P	Field mustard	cytosol	46.02	44.78
VIT_08s0040g01940.t01	Wine grape	cytosol	55.71	44.48
Bra029788.1-P	Field mustard	nucleus, plastid	58.13	44.09
TraesCS7D01G473200.1	Wheat	cytosol	46.02	43.89
TraesCS7A01G486700.1	Wheat	cytosol	46.02	43.89
KRH67682	Soybean	nucleus	50.17	42.52
Os01t0374900-01	Rice	plastid	45.67	42.17
GSMUA_Achr2P12340_001	Banana	nucleus	57.09	41.35
EER92535	Sorghum	nucleus	56.75	40.8
KRG95976	Soybean	plastid	51.56	40.71
Zm00001d028475_P002	Maize	cytosol	56.06	40.5
TraesCS4B01G220700.1	Wheat	cytosol	56.4	40.25
TraesCS4A01G083500.1	Wheat	cytosol	56.06	40.0
TraesCS4D01G221000.1	Wheat	cytosol	56.06	40.0
HORVU7Hr1G109550.2	Barley	cytosol	45.33	39.82
KRH05126	Soybean	cytosol	13.15	39.18
Os10t0204100-01	Rice	nucleus	55.71	37.88
HORVU0Hr1G008700.4	Barley	cytosol	55.36	37.74
Bra020773.1-P	Field mustard	mitochondrion	43.6	34.71
Bra002208.1-P	Field mustard	mitochondrion, nucleus	44.29	34.22
Os03t0254900-02	Rice	cytosol, endoplasmic reticulum	54.33	32.64
Solyc04g054680.1.1	Tomato	cytosol	35.64	28.77
Solyc04g054650.1.1	Tomato	cytosol	39.1	23.25

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra003133	EnsemblPlants:Bra003133.1	EnsemblPlants:Bra003133.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	UniProt:M4CG01
PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR22996	PANTHER:PTHR22996:SF0	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0002541358	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

AT5G03200 (E=2e-068) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA07:-:11513400..11514423

Molecular Weight (calculated)

31995.9 Da

IEP (calculated)

6.611

GRAVY (calculated)

-0.509

Length

289 amino acids

Sequence
(BLAST)

001: MGNVTGGNRR DPPPYTNPNH PPPLQYHQYY QGYYPYHNPQ GATRAPYPQV AYVEHQEAVT IKNDVNLNKD TLRFEPDESN PGKFLLSFTF DANVPGSITV
101: MFFAKEGKDC DLIATKADLF PSTTVSFPKG LGQKFKQPCG TGIELSALSE AELVEANESD VYHVAVKAEG KTPNRQITHA VLEKEKGEYK AKVVKQVLWV
201: NGSKYVLKEI YGIGNTADGS GGEDETESGK ECVICLTEPR DTTVLPCRHM CMCSGCAKLL RFQTNLCPIC RQPVNRLLEI TVNTNVSNN

Best Arabidopsis Sequence Match ( AT3G53410.1 )
(BLAST)

001: MGNVISGGSR PENHRDRTSP PYPNPNAQYQ GNYPSPYQDC ARYPYGEMAS PVQYVEHQEA VTIRNDINLK KETLRLEPDE QNPGKFLLSF TFDASVPGSI
101: TVMFFAKEGK DCNLIATKED LFPSTQVSFA KGLEQRFKQA CGTGIDFSDM SEADLVEANE TDVYHVAVKA EVVSEDDHPE SGTPNRQITH VVLEKDHKGE
201: YKARVVKQIL WVNGNRYVLQ EIYGIGNTVD DNGEDANERG KECVICLSEP RDTTVLPCRH MCMCSGCAKL LRFQTNLCPI CRQPVDRLLE ITVNNNDRN

Arabidopsis Description

LUL2Probable E3 ubiquitin-protein ligase LUL2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFH6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.