CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02920
KRH05332
KRH15701
KRH18976
KRH52586
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09770.1	KRH02920	AT2G24762.1	22291198
AT3G09770.1	KRH18976	AT2G24762.1	22291198
AT3G09770.1	KRH02920	AT4G25760.1	22291198
AT3G09770.1	KRH18976	AT4G25760.1	22291198
AT3G09770.1	KRH02920	AT4G31730.1	22291198
AT3G09770.1	KRH18976	AT4G31730.1	22291198
AT3G09770.1	KRH02920	AT4G31730.1	24036454
AT3G09770.1	KRH18976	AT4G31730.1	24036454
AT3G53410.1	KRH52586	AT1G22920.1	21798944
AT3G53410.1	KRH61926	AT1G22920.1	21798944
AT3G53410.1	KRH02920	AT4G25760.1	22291198
AT3G53410.1	KRH18976	AT4G25760.1	22291198
AT3G53410.1	KRH02920	AT5G57685.1	22291198
AT3G53410.1	KRH18976	AT5G57685.1	22291198
AT5G03200.1	KRH02920	AT4G31730.1	22291198
AT5G03200.1	KRH18976	AT4G31730.1	22291198
AT5G03200.1	KRH05332	AT5G24920.1	22291198
AT5G03200.1	KRH15701	AT5G24920.1	22291198

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32464	Soybean	plastid	89.68	89.68
KRH05126	Soybean	cytosol	23.21	83.51
CDX70325	Canola	cytosol	20.34	68.93
VIT_08s0040g01940.t01	Wine grape	cytosol	69.91	67.4
KRH67682	Soybean	nucleus	64.76	66.28
CDY41587	Canola	cytosol	52.15	66.18
PGSC0003DMT400004461	Potato	plastid	68.48	65.84
PGSC0003DMT400027153	Potato	nucleus, plastid	59.6	65.62
KRG95976	Soybean	plastid	68.48	65.3
Solyc09g007700.2.1	Tomato	plastid	67.62	65.19
Solyc10g084100.1.1	Tomato	nucleus, plastid	58.45	63.95
GSMUA_Achr11P...	Banana	cytosol	53.87	63.51
GSMUA_Achr5P14690_001	Banana	cytosol	55.59	63.19
Zm00001d015671_P001	Maize	cytosol	40.69	63.11
GSMUA_Achr7P01960_001	Banana	cytosol	53.3	60.78
PGSC0003DMT400045328	Potato	plastid	59.6	59.43
Solyc10g086080.1.1	Tomato	nucleus	57.02	59.4
Bra029788.1-P	Field mustard	nucleus, plastid	63.32	58.01
AT3G53410.1	Thale cress	cytosol	49.57	57.86
CDY67386	Canola	cytosol	47.85	57.79
Bra003133.1-P	Field mustard	nucleus	47.85	57.79
CDY13299	Canola	cytosol	48.14	57.14
CDY44729	Canola	plastid	63.32	56.81
CDY41312	Canola	plastid	60.46	56.72
Bra034086.1-P	Field mustard	nucleus, plastid	60.17	56.6
CDY22203	Canola	mitochondrion, plastid	60.17	56.45
EER92535	Sorghum	nucleus	64.18	55.72
AT3G09770.1	Thale cress	plastid	61.6	55.41
Zm00001d028475_P002	Maize	cytosol	63.04	55.0
TraesCS4D01G221000.1	Wheat	cytosol	63.61	54.81
TraesCS4B01G220700.1	Wheat	cytosol	63.61	54.81
TraesCS4A01G083500.1	Wheat	cytosol	63.32	54.57
GSMUA_Achr2P12340_001	Banana	nucleus	61.6	53.88
CDY44348	Canola	cytosol	40.4	53.61
Bra009546.1-P	Field mustard	cytosol	44.99	52.86
CDY10400	Canola	cytosol	44.99	52.68
KRH22903	Soybean	mitochondrion, nucleus	46.42	52.43
Os10t0204100-01	Rice	nucleus	63.04	51.76
HORVU0Hr1G008700.4	Barley	cytosol	61.89	50.94
TraesCS7B01G390000.1	Wheat	mitochondrion	39.26	49.64
Bra028846.1-P	Field mustard	cytosol	37.54	49.25
CDY62899	Canola	cytosol	37.54	49.25
AT5G03200.1	Thale cress	mitochondrion	47.28	48.96
CDX70324	Canola	cytosol	23.5	48.81
Os01t0374900-01	Rice	plastid	43.55	48.56
TraesCS7D01G473200.1	Wheat	cytosol	41.83	48.18
TraesCS7A01G486700.1	Wheat	cytosol	41.83	48.18
KRH51029	Soybean	mitochondrion	43.84	45.54
Os03t0254900-02	Rice	cytosol, endoplasmic reticulum	60.74	44.07
KRH20904	Soybean	mitochondrion	46.7	43.94
KRH11381	Soybean	mitochondrion	46.7	43.7
HORVU7Hr1G109550.2	Barley	cytosol	40.97	43.47
KRH02118	Soybean	cytosol, mitochondrion	32.95	41.67
Solyc04g054680.1.1	Tomato	cytosol	36.1	35.2
Solyc04g054650.1.1	Tomato	cytosol	38.68	27.78

Protein Annotations

EMBL:ACUP02008210	EnsemblPlants:KRH19856	EnsemblPlantsGene:GLYMA_13G139400	EntrezGene:100789032	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	PFAM:PF13920
PFscan:PS50089	ProteinID:KRH19856	ProteinID:KRH19856.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI000233ADB9	UniProt:I1LZ40	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:25198587..25202806

Molecular Weight (calculated)

38229.2 Da

IEP (calculated)

5.843

GRAVY (calculated)

-0.512

Length

349 amino acids

Sequence
(BLAST)

001: MGNIGSSGSN SRRRHGGGGG SGRRIHPPPP QVMPPPEVTA NQFVYPPAAT PYHNYPGYYP APTTMPAPLP APYDHHHRTA VDPMWGRYPV AAPPAPAPYV
101: EHQKAVTIKN DVNIKKETLR IEPDDENPGR FLVSFTFDAT VSGSITILFF AKEGEGCTLT PMKENVLPPV TVNFQQGLGQ KFKQPAGTGI DFSTFEESEL
201: LKVGDMDVYP VAIKADASSS DHDESKSNET PSSGSSNSQI TQAVFEKEKG EFQVKVVKQI LWVNGMRYEL QEIYGIGNSV ESDVDGNDPG KECVICLSEP
301: RDTTVLPCRH MCMCSGCAKV LRFQTNRCPI CRQPVERLLE IKVGPEPEE

Best Arabidopsis Sequence Match ( AT3G09770.1 )
(BLAST)

001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE

Arabidopsis Description

LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.