CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
endoplasmic reticulum 2
nucleus 1
extracellular 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95976
KRH05126
KRH19856
KRH32464
KRH67682

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24920.1	KRG95976	AT3G09770.1	22291198
AT5G24920.1	KRH05126	AT3G09770.1	22291198
AT5G24920.1	KRH19856	AT3G09770.1	22291198
AT5G24920.1	KRH32464	AT3G09770.1	22291198
AT5G24920.1	KRH67682	AT3G09770.1	22291198

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05332	Soybean	plastid	44.51	46.02
AT5G24920.1	Thale cress	golgi, plasma membrane, plastid	30.22	41.98
Bra009804.1-P	Field mustard	extracellular	22.53	41.0
CDX80475	Canola	cytosol, endoplasmic reticulum, plasma membrane	29.67	39.42
KRG93760	Soybean	plastid	21.98	37.74
KRH61627	Soybean	endoplasmic reticulum, plasma membrane, plastid	34.07	37.58
KRH01450	Soybean	endoplasmic reticulum, plasma membrane, plastid	22.53	37.27
KRH52294	Soybean	plastid	32.97	36.36
KRH02920	Soybean	endoplasmic reticulum, nucleus, plasma membrane	31.32	34.76
Solyc12g096480.1.1	Tomato	plastid	28.57	34.21
PGSC0003DMT400075274	Potato	plastid	28.57	33.12
KRH01448	Soybean	plastid	21.98	32.52
KRH45165	Soybean	endoplasmic reticulum, plasma membrane, plastid	20.88	32.48
Solyc08g006520.1.1	Tomato	cytosol, endoplasmic reticulum, plasma membrane, plastid	31.32	32.02
PGSC0003DMT400075273	Potato	cytosol, endoplasmic reticulum, plasma membrane, plastid	26.37	31.79
Solyc12g096490.1.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	28.57	31.71
KRH45164	Soybean	plastid	20.88	30.16
PGSC0003DMT400067619	Potato	mitochondrion	29.67	29.67
KRH18976	Soybean	plasma membrane	31.32	24.36

Protein Annotations

EMBL:ACUP02008631	EnsemblPlants:KRH15701	EnsemblPlantsGene:GLYMA_14G105200	EntrezGene:100817393	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR33228	PANTHER:PTHR33228:SF5	ProteinID:KRH15701	ProteinID:KRH15701.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI000233B9DF	UniProt:I1M9B0	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr14:-:10798891..10799849

Molecular Weight (calculated)

20045.3 Da

IEP (calculated)

4.654

GRAVY (calculated)

-0.425

Length

182 amino acids

Sequence
(BLAST)

001: MRSTPIPPTT KTNTLAPASS TAVVTTTTTT NTTSVASPWH SPVPYLFGGL AAIMALIALA LFMLACSYWR LTRITQQESN NDDDDDDDVV KEVDDDSEKK
101: EQPKVYEEKI LVIMAGDHKP TFLATPSSSL GCSNFDHKHL GISEDSNKSQ KEVIVDDHVV VSDAEHENGS FRHEQRIVSE RL

Best Arabidopsis Sequence Match ( AT5G57685.1 )
(BLAST)

001: MEGRQYYPPR ENVEGNRTTM GGGPHSPWHS PVPYLFGGLA AMLGLIAFAL LILACSYWRL SGYLDGEENQ SRERDLEVGD VKPDKTAVKP VALPEKFLVI
101: MAGNVKPTYL ATPSVKTCTC DDDDDEDDDV EGSDQVVPRS SESNGETH

Arabidopsis Description

GDU3Protein GLUTAMINE DUMPER 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH5]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.