CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
endoplasmic reticulum 2
nucleus 1
extracellular 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95976
KRH05126
KRH19856
KRH32464
KRH67682

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24920.1	KRG95976	AT3G09770.1	22291198
AT5G24920.1	KRH05126	AT3G09770.1	22291198
AT5G24920.1	KRH19856	AT3G09770.1	22291198
AT5G24920.1	KRH32464	AT3G09770.1	22291198
AT5G24920.1	KRH67682	AT3G09770.1	22291198

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15701	Soybean	plastid	46.02	44.51
AT5G24920.1	Thale cress	golgi, plasma membrane, plastid	29.55	39.69
KRH01450	Soybean	endoplasmic reticulum, plasma membrane, plastid	23.86	38.18
KRG93760	Soybean	plastid	22.73	37.74
KRH52294	Soybean	plastid	34.09	36.36
KRH45165	Soybean	endoplasmic reticulum, plasma membrane, plastid	23.86	35.9
KRH61627	Soybean	endoplasmic reticulum, plasma membrane, plastid	32.39	34.55
KRH01448	Soybean	plastid	23.86	34.15
CDX80475	Canola	cytosol, endoplasmic reticulum, plasma membrane	26.14	33.58
Bra009804.1-P	Field mustard	extracellular	18.75	33.0
KRH02920	Soybean	endoplasmic reticulum, nucleus, plasma membrane	30.11	32.32
KRH45164	Soybean	plastid	22.16	30.95
Solyc08g006520.1.1	Tomato	cytosol, endoplasmic reticulum, plasma membrane, plastid	31.25	30.9
PGSC0003DMT400067619	Potato	mitochondrion	31.25	30.22
PGSC0003DMT400075274	Potato	plastid	26.7	29.94
Solyc12g096490.1.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	27.84	29.88
PGSC0003DMT400075273	Potato	cytosol, endoplasmic reticulum, plasma membrane, plastid	25.57	29.8
Solyc12g096480.1.1	Tomato	plastid	25.57	29.61
KRH18976	Soybean	plasma membrane	31.82	23.93

Protein Annotations

EMBL:ACUP02010727	EMBL:BT090101	EnsemblPlants:KRH05332	EnsemblPlantsGene:GLYMA_17G220900	EntrezGene:100306141	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR33228	PANTHER:PTHR33228:SF5	ProteinID:KRH05332	ProteinID:KRH05332.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0001B15682	UniProt:C6SY54	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr17:+:37333252..37334381

Molecular Weight (calculated)

19235.5 Da

IEP (calculated)

5.792

GRAVY (calculated)

-0.422

Length

176 amino acids

Sequence
(BLAST)

001: MRSIPIPPTT TTNTLAPTSS TVVVVTTMTT MTNKTSVPSA WHSPVPYLFG GLAAIMALIA LALLMLACSY WRLTQESNNN NNNNVVKEGD DDSEKKEQPK
101: VYEEKILVIM AGDHNPTFLA TPSSSFGCCS NFDHKKHLGN SEDSNNSYKE TVDDHVVLNA THESGSARHD QHSENL

Best Arabidopsis Sequence Match ( AT2G24762.1 )
(BLAST)

001: MRPLSIKPTS LDVARHATSV ESFGNHRPPI SPWHSPVPYL FGGLAAMLGL IAFALLILAC SYWRLSTSGD DSGERVDEEK ESRSGVKAAS AACEEKVLVI
101: MAGDDLPRFL ATPAANKCMC GHEGRMVIFK EDGIGAGEEK MGDREKAKEN EETTSQ

Arabidopsis Description

GDU4Protein GLUTAMINE DUMPER 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8A0]
SUBAcon: [plasma membrane,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.