CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02920
KRH05332
KRH15701
KRH18976
KRH52586
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09770.1	KRH02920	AT2G24762.1	22291198
AT3G09770.1	KRH18976	AT2G24762.1	22291198
AT3G09770.1	KRH02920	AT4G25760.1	22291198
AT3G09770.1	KRH18976	AT4G25760.1	22291198
AT3G09770.1	KRH02920	AT4G31730.1	22291198
AT3G09770.1	KRH18976	AT4G31730.1	22291198
AT3G09770.1	KRH02920	AT4G31730.1	24036454
AT3G09770.1	KRH18976	AT4G31730.1	24036454
AT3G53410.1	KRH52586	AT1G22920.1	21798944
AT3G53410.1	KRH61926	AT1G22920.1	21798944
AT3G53410.1	KRH02920	AT4G25760.1	22291198
AT3G53410.1	KRH18976	AT4G25760.1	22291198
AT3G53410.1	KRH02920	AT5G57685.1	22291198
AT3G53410.1	KRH18976	AT5G57685.1	22291198
AT5G03200.1	KRH02920	AT4G31730.1	22291198
AT5G03200.1	KRH18976	AT4G31730.1	22291198
AT5G03200.1	KRH05332	AT5G24920.1	22291198
AT5G03200.1	KRH15701	AT5G24920.1	22291198

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67682	Soybean	nucleus	80.6	86.51
KRH32464	Soybean	plastid	66.12	69.34
KRH19856	Soybean	nucleus	65.3	68.48
CDX70325	Canola	cytosol	18.31	65.05
VIT_08s0040g01940.t01	Wine grape	cytosol	61.75	62.43
PGSC0003DMT400027153	Potato	nucleus, plastid	53.83	62.15
Solyc10g084100.1.1	Tomato	nucleus, plastid	53.83	61.76
PGSC0003DMT400004461	Potato	plastid	61.2	61.71
Zm00001d015671_P001	Maize	cytosol	37.7	61.33
Solyc09g007700.2.1	Tomato	plastid	60.38	61.05
KRH05126	Soybean	cytosol	16.12	60.82
CDY41587	Canola	cytosol	44.81	59.64
GSMUA_Achr11P...	Banana	cytosol	46.72	57.77
GSMUA_Achr5P14690_001	Banana	cytosol	47.81	57.0
PGSC0003DMT400045328	Potato	plastid	54.1	56.57
Solyc10g086080.1.1	Tomato	nucleus	51.64	56.42
AT3G53410.1	Thale cress	cytosol	45.08	55.18
GSMUA_Achr7P01960_001	Banana	cytosol	45.63	54.58
Bra029788.1-P	Field mustard	nucleus, plastid	56.28	54.07
CDY22203	Canola	mitochondrion, plastid	54.92	54.03
AT3G09770.1	Thale cress	plastid	57.1	53.87
CDY41312	Canola	plastid	54.64	53.76
Bra034086.1-P	Field mustard	nucleus, plastid	54.37	53.64
CDY44729	Canola	plastid	56.01	52.7
EER92535	Sorghum	nucleus	57.65	52.49
CDY44348	Canola	cytosol	37.43	52.09
Zm00001d028475_P002	Maize	cytosol	56.83	52.0
TraesCS4D01G221000.1	Wheat	cytosol	57.38	51.85
TraesCS4B01G220700.1	Wheat	cytosol	57.1	51.6
CDY67386	Canola	cytosol	40.71	51.56
Bra003133.1-P	Field mustard	nucleus	40.71	51.56
GSMUA_Achr2P12340_001	Banana	nucleus	56.01	51.38
TraesCS4A01G083500.1	Wheat	cytosol	56.83	51.36
CDY13299	Canola	cytosol	40.44	50.34
CDY10400	Canola	cytosol	40.98	50.34
Bra009546.1-P	Field mustard	cytosol	40.71	50.17
KRH22903	Soybean	mitochondrion, nucleus	41.8	49.51
CDY62899	Canola	cytosol	35.79	49.25
Bra028846.1-P	Field mustard	cytosol	35.79	49.25
TraesCS7B01G390000.1	Wheat	mitochondrion	36.07	47.83
HORVU0Hr1G008700.4	Barley	cytosol	54.92	47.41
AT5G03200.1	Thale cress	mitochondrion	42.9	46.59
Os10t0204100-01	Rice	nucleus	53.55	46.12
CDX70324	Canola	cytosol	21.04	45.83
TraesCS7A01G486700.1	Wheat	cytosol	37.43	45.21
TraesCS7D01G473200.1	Wheat	cytosol	36.89	44.55
Os01t0374900-01	Rice	plastid	37.98	44.41
Os03t0254900-02	Rice	cytosol, endoplasmic reticulum	54.92	41.79
HORVU7Hr1G109550.2	Barley	cytosol	37.16	41.34
KRH20904	Soybean	mitochondrion	41.8	41.24
KRH51029	Soybean	mitochondrion	36.89	40.18
KRH11381	Soybean	mitochondrion	40.71	39.95
KRH02118	Soybean	cytosol, mitochondrion	28.96	38.41
Solyc04g054680.1.1	Tomato	cytosol	31.97	32.68
Solyc04g054650.1.1	Tomato	cytosol	34.43	25.93

Protein Annotations

EMBL:ACUP02012142	EnsemblPlants:KRG95976	EnsemblPlantsGene:GLYMA_19G181100	EntrezGene:100807343	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	PFAM:PF13920
PFscan:PS50089	ProteinID:KRG95976	ProteinID:KRG95976.1	SEG:seg	SUPFAM:SSF57850	UniParc:UPI000233F46A
UniProt:I1NA88	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:43985048..43988793

Molecular Weight (calculated)

40743.1 Da

IEP (calculated)

6.817

GRAVY (calculated)

-0.614

Length

366 amino acids

Sequence
(BLAST)

001: MGNISSSGGV GGGNPRRRHS GASRRSHPPP PPPVTPQPEI AANPFVYHGA ASPYPNPPLH YPQYHYPGYY PSVPPPMPHH PHHHHHQHHH PHMDPAWIQG
101: RYPCGPMMPN PAPFVEHQKA VTIKNDVNIR KETLRLEPDE QNSGHLLVSF SFDATVSGSI AIYFFAKEGE GCILTPMKEN HLAPVTVHFE QGLGQKFRQA
201: AGTGIDFSVF EESELLKVGD MNVYPLAVKA DASVKADAPP GNYDESDRSP TSGNTNSQIT QVVFEKEKGE FRVKVAKQIL WVNGMRYELQ EIYGIGNSTE
301: SDLDENDQGK DCVICWSEPR DTIVHPCRHM CMCSGCAKVL RFQTDRCPIC RQPIERLLEI KVGSEE

Best Arabidopsis Sequence Match ( AT3G09770.1 )
(BLAST)

001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE

Arabidopsis Description

LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.