Factsheet for Solyc04g054650.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g073150.2.1
Solyc08g006520.1.1
Solyc11g017300.1.1
Solyc12g096480.1.1
Solyc12g096490.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53410.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT3G53410.1	Solyc11g017300.1.1	AT1G22920.1	21798944
AT5G03200.1	Solyc08g006520.1.1	AT5G24920.1	22291198
AT5G03200.1	Solyc12g096480.1.1	AT5G24920.1	22291198
AT5G03200.1	Solyc12g096490.1.1	AT5G24920.1	22291198

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g054680.1.1	Tomato	cytosol	48.56	65.92
CDX70325	Canola	cytosol	12.76	60.19
Zm00001d015671_P001	Maize	cytosol	24.49	52.89
Solyc10g086080.1.1	Tomato	nucleus	34.98	50.75
CDY41587	Canola	cytosol	27.98	49.45
PGSC0003DMT400045328	Potato	plastid	33.54	46.57
GSMUA_Achr5P14690_001	Banana	cytosol	27.37	43.32
GSMUA_Achr7P01960_001	Banana	cytosol	26.95	42.81
Solyc10g084100.1.1	Tomato	nucleus, plastid	27.78	42.32
Solyc09g007700.2.1	Tomato	plastid	31.28	41.99
Solyc01g080080.2.1	Tomato	nucleus	13.37	41.67
KRH05126	Soybean	cytosol	8.02	40.21
GSMUA_Achr11P...	Banana	cytosol	24.49	40.2
AT3G53410.1	Thale cress	cytosol	24.69	40.13
KRH32464	Soybean	plastid	28.81	40.11
Bra028846.1-P	Field mustard	cytosol	21.6	39.47
CDY62899	Canola	cytosol	21.6	39.47
CDY44348	Canola	cytosol	21.19	39.16
CDY67386	Canola	cytosol	23.25	39.1
Bra003133.1-P	Field mustard	nucleus	23.25	39.1
KRH19856	Soybean	nucleus	27.78	38.68
VIT_08s0040g01940.t01	Wine grape	cytosol	28.81	38.67
CDY13299	Canola	cytosol	23.05	38.1
TraesCS7B01G390000.1	Wheat	mitochondrion	20.78	36.59
Bra029788.1-P	Field mustard	nucleus, plastid	28.6	36.48
AT3G09770.1	Thale cress	plastid	28.81	36.08
CDY44729	Canola	plastid	28.81	35.99
Bra034086.1-P	Field mustard	nucleus, plastid	27.37	35.85
CDY41312	Canola	plastid	27.37	35.75
CDY22203	Canola	mitochondrion, plastid	27.16	35.48
GSMUA_Achr2P12340_001	Banana	nucleus	29.01	35.34
TraesCS7D01G473200.1	Wheat	cytosol	21.81	34.98
AT5G03200.1	Thale cress	mitochondrion	24.07	34.72
TraesCS7A01G486700.1	Wheat	cytosol	21.6	34.65
KRG95976	Soybean	plastid	25.93	34.43
KRH67682	Soybean	nucleus	24.07	34.31
CDY10400	Canola	cytosol	20.99	34.23
Zm00001d028475_P002	Maize	cytosol	27.98	34.0
Bra009546.1-P	Field mustard	cytosol	20.58	33.67
EER92535	Sorghum	nucleus	27.78	33.58
TraesCS4A01G083500.1	Wheat	cytosol	27.98	33.58
TraesCS4B01G220700.1	Wheat	cytosol	27.98	33.58
TraesCS4D01G221000.1	Wheat	cytosol	27.98	33.58
HORVU7Hr1G109550.2	Barley	cytosol	22.63	33.43
Os10t0204100-01	Rice	nucleus	28.6	32.71
HORVU0Hr1G008700.4	Barley	cytosol	28.19	32.31
Os01t0374900-01	Rice	plastid	20.37	31.63
Os03t0254900-02	Rice	cytosol, endoplasmic reticulum	26.95	27.23
Solyc01g098750.2.1	Tomato	plastid	20.99	26.42
CDX70324	Canola	cytosol	7.41	21.43

Protein Annotations

EnsemblPlants:Solyc04g054650.1.1	EnsemblPlantsGene:Solyc04g054650.1	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF0	PFAM:PF13920	PFscan:PS50089	SUPFAM:SSF57850
UniParc:UPI000276583D	UniProt:K4BSL3	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr4:+:52918926..52921308

Molecular Weight (calculated)

55853.3 Da

IEP (calculated)

8.886

GRAVY (calculated)

-0.517

Length

486 amino acids

Sequence
(BLAST)

001: MKLSRDPTDN KLIEQELEIS KQYGKQTGAR DQFLKQKEKI QWIQEGDQNT KFYHNYIKAR RNTNRIFGVK DKHGERQEGM EEISEAFLEY YSELLGQSNK
101: ERKHACREII IKGSLVNKLP GPDEYWSQFF KDNWEIVGKD VVKGVMEFFR TKKIKGDYQS ALLMLRYMKS FSGASELTNN AIKSNIFSAN MEQQELNDLC
201: EVSGYAKRKL PFRYLGVPVS AKRLSPEDCE VLVERMASRV RTWVSRNLSY AGGVQFVNSV LMHMHSYWAT IFMLPKKVLK DITTICRNYI WSGKATTNRP
301: PLPKREAGLC QMEPSSNCNI FLNVGRLTPM KESLFPPITI QFKKGLSQKF RQSSGTGIDI SMFGEAELCN ADIYELAVKI TQAVFEKEKG EFKIRVVKQV
401: NGMRYELQEI YGIGNSVDKD FDGNDNGKEC VVCLSEARDT TVLPCRHMCI CSGSAQVLRF QTNRCPICRQ PVERFLEIKV SEASEE

Best Arabidopsis Sequence Match ( AT3G09770.1 )
(BLAST)

001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE

Arabidopsis Description

LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.