Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 2
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400075273 | Potato | cytosol, endoplasmic reticulum, plasma membrane, plastid | 70.12 | 76.16 |
| Solyc12g096480.1.1 | Tomato | plastid | 45.12 | 48.68 |
| AT5G24920.1 | Thale cress | golgi, plasma membrane, plastid | 35.98 | 45.04 |
| Solyc08g006520.1.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane, plastid | 41.46 | 38.2 |
| Bra009804.1-P | Field mustard | extracellular | 23.17 | 38.0 |
| CDX80475 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 31.1 | 37.23 |
| Solyc02g089450.1.1 | Tomato | plastid | 21.95 | 36.73 |
| GSMUA_Achr11P... | Banana | extracellular, golgi, mitochondrion, plastid | 33.54 | 36.18 |
| Zm00001d036703_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 29.88 | 33.79 |
| GSMUA_Achr1P23400_001 | Banana | cytosol, mitochondrion, plasma membrane | 31.71 | 33.12 |
| GSMUA_Achr7P05080_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 29.88 | 32.89 |
| EES13936 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 35.37 | 32.77 |
| GSMUA_Achr10P... | Banana | golgi, plasma membrane, plastid | 33.54 | 32.74 |
| GSMUA_Achr7P16360_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 20.12 | 32.67 |
| Solyc02g089460.1.1 | Tomato | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid | 20.12 | 32.67 |
| Solyc02g089480.1.1 | Tomato | plasma membrane | 23.78 | 32.23 |
| Zm00001d032115_P001 | Maize | extracellular, golgi, plasma membrane | 34.76 | 32.02 |
| TraesCS4D01G079800.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 31.71 | 31.9 |
| TraesCS4B01G081100.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 31.1 | 31.68 |
| VIT_04s0008g07370.t01 | Wine grape | plastid | 32.93 | 31.58 |
| Os08t0446800-01 | Rice | endoplasmic reticulum, extracellular, plasma membrane | 34.15 | 31.11 |
| Solyc07g006600.1.1 | Tomato | endoplasmic reticulum, nucleus, plastid | 34.76 | 30.81 |
| TraesCS4A01G234200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 31.71 | 30.59 |
| Zm00001d050079_P001 | Maize | extracellular, golgi, plasma membrane | 34.76 | 30.0 |
| Zm00001d053729_P001 | Maize | plastid | 25.61 | 28.97 |
| Os06t0654400-00 | Rice | endoplasmic reticulum, nucleus, plasma membrane | 32.32 | 28.8 |
| HORVU4Hr1G013760.1 | Barley | golgi, mitochondrion, plasma membrane, plastid | 32.93 | 28.72 |
| KRH15701 | Soybean | plastid | 31.71 | 28.57 |
| HORVU7Hr1G111310.2 | Barley | endoplasmic reticulum, mitochondrion, plasma membrane | 31.1 | 28.18 |
| TraesCS6A01G150800.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 28.66 | 28.14 |
| KRH05332 | Soybean | plastid | 29.88 | 27.84 |
| TraesCS7A01G498100.1 | Wheat | endoplasmic reticulum | 31.71 | 27.51 |
| TraesCS7D01G485100.1 | Wheat | endoplasmic reticulum, nucleus, peroxisome | 33.54 | 26.96 |
| TraesCS7B01G404900.1 | Wheat | endoplasmic reticulum, nucleus, plasma membrane | 35.37 | 26.85 |
| EER90144 | Sorghum | endoplasmic reticulum, plasma membrane, plastid | 31.71 | 26.8 |
| TraesCS7B01G405000.1 | Wheat | endoplasmic reticulum, mitochondrion, plasma membrane | 32.93 | 26.6 |
| EER88756 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 31.1 | 26.42 |
| TraesCS7A01G497900.1 | Wheat | endoplasmic reticulum | 34.76 | 26.39 |
| Zm00001d024198_P001 | Maize | plastid | 28.05 | 26.29 |
| HORVU1Hr1G003060.2 | Barley | endoplasmic reticulum, mitochondrion, plasma membrane | 34.15 | 26.17 |
| TraesCS6B01G178900.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 27.44 | 26.16 |
| TraesCS7D01G485400.1 | Wheat | golgi, mitochondrion, plasma membrane | 32.32 | 25.98 |
| TraesCS7D01G485300.1 | Wheat | endoplasmic reticulum, nucleus, plasma membrane | 34.15 | 25.93 |
| HORVU1Hr1G003080.1 | Barley | endoplasmic reticulum, nucleus, plasma membrane | 34.15 | 25.81 |
| HORVU7Hr1G111350.1 | Barley | endoplasmic reticulum, nucleus, plasma membrane | 34.15 | 25.81 |
| EES06373 | Sorghum | endoplasmic reticulum, nucleus, plasma membrane, plastid | 31.71 | 25.74 |
| Zm00001d015470_P001 | Maize | plastid | 30.49 | 25.64 |
| Zm00001d046927_P001 | Maize | endoplasmic reticulum, mitochondrion, plasma membrane | 28.66 | 25.54 |
| EES13610 | Sorghum | plastid | 28.05 | 25.41 |
| HORVU6Hr1G030050.2 | Barley | peroxisome, vacuole | 28.66 | 25.41 |
| HORVU7Hr1G111320.1 | Barley | endoplasmic reticulum, peroxisome, plastid | 32.32 | 24.88 |
| HORVU1Hr1G003070.1 | Barley | endoplasmic reticulum, peroxisome, plastid | 32.32 | 24.88 |
| TraesCS7D01G485200.1 | Wheat | vacuole | 31.71 | 24.41 |
| TraesCS7A01G497800.1 | Wheat | endoplasmic reticulum, nucleus, plasma membrane | 30.49 | 24.27 |
| TraesCS7B01G404600.1 | Wheat | endoplasmic reticulum | 33.54 | 24.23 |
| TraesCS7A01G498000.1 | Wheat | endoplasmic reticulum, mitochondrion, plasma membrane | 29.27 | 24.12 |
| TraesCS6D01G140800.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 24.39 | 23.53 |
| HORVU0Hr1G022370.1 | Barley | mitochondrion | 33.54 | 22.27 |
| Os08t0249200-00 | Rice | plastid | 26.22 | 21.83 |
| TraesCS7B01G404700.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 28.66 | 17.87 |
Protein Annotations
| EnsemblPlants:Solyc12g096490.1.1 | EnsemblPlantsGene:Solyc12g096490.1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR33228 |
| PANTHER:PTHR33228:SF5 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002769D3E | UniProt:K4DHC2 | MapMan:35.1 |
Description
No Description!
Coordinates
chr12:-:65386364..65386858
Molecular Weight (calculated)
17943.1 Da
IEP (calculated)
4.340
GRAVY (calculated)
-0.209
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTVSTFIAT PSTIEPVEST VKTTFSPVES FQRSPWHSPA AYLFIGVAAM LGLIAFALVI LACSYLKRSG ETSDSTDDLE SGAGEKSSGD LVKFVPIYEE
101: KIVVIMAGDL NPTFLATPIS SKSSSFGDEN GSKIEKKLEM EDEELADEKL KDEVFRDQNH EQSH
101: KIVVIMAGDL NPTFLATPIS SKSSSFGDEN GSKIEKKLEM EDEELADEKL KDEVFRDQNH EQSH
001: MRPLSIKPTS LDVARHATSV ESFGNHRPPI SPWHSPVPYL FGGLAAMLGL IAFALLILAC SYWRLSTSGD DSGERVDEEK ESRSGVKAAS AACEEKVLVI
101: MAGDDLPRFL ATPAANKCMC GHEGRMVIFK EDGIGAGEEK MGDREKAKEN EETTSQ
101: MAGDDLPRFL ATPAANKCMC GHEGRMVIFK EDGIGAGEEK MGDREKAKEN EETTSQ
Arabidopsis Description
GDU4Protein GLUTAMINE DUMPER 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8A0]
SUBAcon: [plasma membrane,golgi,plastid]
SUBAcon: [plasma membrane,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.