Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70325 | Canola | cytosol | 17.32 | 60.19 |
| Solyc10g086080.1.1 | Tomato | nucleus | 45.81 | 48.96 |
| Zm00001d015671_P001 | Maize | cytosol | 30.73 | 48.89 |
| Solyc04g054650.1.1 | Tomato | cytosol | 65.92 | 48.56 |
| CDY41587 | Canola | cytosol | 35.47 | 46.18 |
| PGSC0003DMT400045328 | Potato | plastid | 43.85 | 44.86 |
| Solyc01g080080.2.1 | Tomato | nucleus | 18.72 | 42.95 |
| Solyc09g007700.2.1 | Tomato | plastid | 40.78 | 40.33 |
| Solyc10g084100.1.1 | Tomato | nucleus, plastid | 35.75 | 40.13 |
| GSMUA_Achr5P14690_001 | Banana | cytosol | 34.36 | 40.07 |
| GSMUA_Achr7P01960_001 | Banana | cytosol | 33.8 | 39.54 |
| KRH05126 | Soybean | cytosol | 10.61 | 39.18 |
| Bra028846.1-P | Field mustard | cytosol | 28.21 | 37.97 |
| CDY62899 | Canola | cytosol | 28.21 | 37.97 |
| GSMUA_Achr11P... | Banana | cytosol | 31.01 | 37.5 |
| KRH32464 | Soybean | plastid | 36.03 | 36.96 |
| AT3G53410.1 | Thale cress | cytosol | 30.73 | 36.79 |
| CDY44348 | Canola | cytosol | 26.82 | 36.5 |
| VIT_08s0040g01940.t01 | Wine grape | cytosol | 36.87 | 36.46 |
| KRH19856 | Soybean | nucleus | 35.2 | 36.1 |
| CDY67386 | Canola | cytosol | 28.77 | 35.64 |
| Bra003133.1-P | Field mustard | nucleus | 28.77 | 35.64 |
| CDY13299 | Canola | cytosol | 29.05 | 35.37 |
| CDY41312 | Canola | plastid | 36.03 | 34.68 |
| Bra034086.1-P | Field mustard | nucleus, plastid | 35.75 | 34.5 |
| CDY22203 | Canola | mitochondrion, plastid | 35.75 | 34.41 |
| Bra029788.1-P | Field mustard | nucleus, plastid | 36.59 | 34.38 |
| CDY44729 | Canola | plastid | 37.15 | 34.19 |
| AT3G09770.1 | Thale cress | plastid | 36.59 | 33.76 |
| AT5G03200.1 | Thale cress | mitochondrion | 31.56 | 33.53 |
| GSMUA_Achr2P12340_001 | Banana | nucleus | 36.87 | 33.08 |
| KRG95976 | Soybean | plastid | 32.68 | 31.97 |
| TraesCS7B01G390000.1 | Wheat | mitochondrion | 24.58 | 31.88 |
| CDY10400 | Canola | cytosol | 26.54 | 31.88 |
| TraesCS4D01G221000.1 | Wheat | cytosol | 36.03 | 31.85 |
| TraesCS4B01G220700.1 | Wheat | cytosol | 36.03 | 31.85 |
| TraesCS4A01G083500.1 | Wheat | cytosol | 36.03 | 31.85 |
| KRH67682 | Soybean | nucleus | 29.89 | 31.38 |
| Bra009546.1-P | Field mustard | cytosol | 25.98 | 31.31 |
| Zm00001d028475_P002 | Maize | cytosol | 34.92 | 31.25 |
| EER92535 | Sorghum | nucleus | 34.92 | 31.09 |
| Os10t0204100-01 | Rice | nucleus | 36.59 | 30.82 |
| TraesCS7D01G473200.1 | Wheat | cytosol | 25.7 | 30.36 |
| HORVU0Hr1G008700.4 | Barley | cytosol | 35.75 | 30.19 |
| TraesCS7A01G486700.1 | Wheat | cytosol | 25.42 | 30.03 |
| HORVU7Hr1G109550.2 | Barley | cytosol | 26.82 | 29.18 |
| Os01t0374900-01 | Rice | plastid | 24.3 | 27.8 |
| Os03t0254900-02 | Rice | cytosol, endoplasmic reticulum | 34.08 | 25.36 |
| Solyc01g098750.2.1 | Tomato | plastid | 25.14 | 23.32 |
| CDX70324 | Canola | cytosol | 7.54 | 16.07 |
Protein Annotations
| EnsemblPlants:Solyc04g054680.1.1 | EnsemblPlantsGene:Solyc04g054680.1 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22996 | PANTHER:PTHR22996:SF0 | PFAM:PF13920 | PFscan:PS50089 | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI0002765840 | UniProt:K4BSL6 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr4:+:52984635..52987092
Molecular Weight (calculated)
41144.2 Da
IEP (calculated)
6.972
GRAVY (calculated)
-0.671
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLSRDPTDN KLIEQELEIS KQYGKLKGAR DQFLKQKEKI QWIQEGDQNT KFYHNYIKTR RNTNIIFGGK DKHGERQEGM EEISKAFLEY YSELLGQSNK
101: GRKHVCREII MKGSLVNKEQ REQLAAKFTE KEVKEAMWSI DGNKSPGPYE YGSPFFKDNW EIVGKDVVKG VMEFFRTKKM LTGMNDTTIT LIVMLNQWGI
201: TDQYHVKFRQ SSGTGIDVSM FGEAELCNAD IYELAVKAEA LEDGNVSTNF QITQAVFEKE KGKFKIRVVK QVNGMQYELQ EIYGNGNSVD KDFDGNDNGK
301: ECVVCLSEPR DTTVLPCRHM CMCSGCAQVL RFQTNRCPIC RQPVDRFLEI KVSEAAEE
101: GRKHVCREII MKGSLVNKEQ REQLAAKFTE KEVKEAMWSI DGNKSPGPYE YGSPFFKDNW EIVGKDVVKG VMEFFRTKKM LTGMNDTTIT LIVMLNQWGI
201: TDQYHVKFRQ SSGTGIDVSM FGEAELCNAD IYELAVKAEA LEDGNVSTNF QITQAVFEKE KGKFKIRVVK QVNGMQYELQ EIYGNGNSVD KDFDGNDNGK
301: ECVVCLSEPR DTTVLPCRHM CMCSGCAQVL RFQTNRCPIC RQPVDRFLEI KVSEAAEE
001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE
Arabidopsis Description
LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.