CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68780
CDX76795
CDX92732
CDX94417
CDY34757
CDY68098
CDY72356

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09770.1	CDX76795	AT2G24762.1	22291198
AT3G09770.1	CDY34757	AT2G24762.1	22291198
AT3G09770.1	CDX92732	AT4G25760.1	22291198
AT3G09770.1	CDX94417	AT4G25760.1	22291198
AT3G09770.1	CDY68098	AT4G25760.1	22291198
AT3G09770.1	CDY72356	AT4G25760.1	22291198
AT3G09770.1	CDX68780	AT4G31730.1	22291198
AT3G09770.1	CDX68780	AT4G31730.1	24036454

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029788.1-P	Field mustard	nucleus, plastid	96.14	98.16
CDY41587	Canola	cytosol	66.32	93.82
AT3G09770.1	Thale cress	plastid	73.78	73.97
CDY22203	Canola	mitochondrion, plastid	69.92	73.12
CDY41312	Canola	plastid	68.38	71.51
CDX70325	Canola	cytosol	18.51	69.9
KRH32464	Soybean	plastid	57.33	63.9
PGSC0003DMT400004461	Potato	plastid	59.38	63.64
Solyc09g007700.2.1	Tomato	plastid	59.13	63.54
KRH19856	Soybean	nucleus	56.81	63.32
GSMUA_Achr5P14690_001	Banana	cytosol	49.87	63.19
Zm00001d015671_P001	Maize	cytosol	36.5	63.11
PGSC0003DMT400027153	Potato	nucleus, plastid	50.9	62.46
VIT_08s0040g01940.t01	Wine grape	cytosol	58.1	62.43
Solyc10g084100.1.1	Tomato	nucleus, plastid	51.16	62.38
GSMUA_Achr11P...	Banana	cytosol	45.76	60.14
GSMUA_Achr7P01960_001	Banana	cytosol	47.3	60.13
CDY44348	Canola	cytosol	40.36	59.7
Solyc10g086080.1.1	Tomato	nucleus	51.16	59.4
PGSC0003DMT400045328	Potato	plastid	52.7	58.57
KRH67682	Soybean	nucleus	51.16	58.36
CDY67386	Canola	cytosol	42.93	57.79
CDY10400	Canola	cytosol	44.22	57.72
EER92535	Sorghum	nucleus	59.38	57.46
CDY62899	Canola	cytosol	39.07	57.14
CDY13299	Canola	cytosol	42.93	56.8
Zm00001d028475_P002	Maize	cytosol	58.35	56.75
CDY13950	Canola	cytosol	14.4	56.57
KRG95976	Soybean	plastid	52.7	56.01
TraesCS4D01G221000.1	Wheat	cytosol	57.58	55.31
TraesCS4B01G220700.1	Wheat	cytosol	57.58	55.31
TraesCS4A01G083500.1	Wheat	cytosol	57.58	55.31
CDX70324	Canola	cytosol	23.65	54.76
GSMUA_Achr2P12340_001	Banana	nucleus	56.04	54.64
Os10t0204100-01	Rice	nucleus	58.87	53.88
HORVU0Hr1G008700.4	Barley	cytosol	57.33	52.59
KRH05126	Soybean	cytosol	12.6	50.52
TraesCS7B01G390000.1	Wheat	mitochondrion	34.19	48.19
TraesCS7D01G473200.1	Wheat	cytosol	36.76	47.19
TraesCS7A01G486700.1	Wheat	cytosol	36.25	46.53
Os01t0374900-01	Rice	plastid	36.5	45.37
CDY13958	Canola	cytosol	22.36	45.31
Os03t0254900-02	Rice	cytosol, endoplasmic reticulum	54.24	43.87
HORVU7Hr1G109550.2	Barley	cytosol	35.22	41.64
CDY24715	Canola	mitochondrion	38.05	40.77
CDY05235	Canola	mitochondrion	37.79	40.27
CDX92559	Canola	mitochondrion	38.05	39.78
CDY13949	Canola	mitochondrion	38.05	38.34
Solyc04g054680.1.1	Tomato	cytosol	34.19	37.15
Solyc04g054650.1.1	Tomato	cytosol	35.99	28.81

Protein Annotations

EnsemblPlants:CDY44729	EnsemblPlantsGene:GSBRNA2T00080708001	Gene3D:3.30.40.10	GO:A0A078I5H6	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF0	PFAM:PF13920	PFscan:PS50089
ProteinID:CDY44729	ProteinID:CDY44729.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EF1631
UniProt:A0A078I5H6	MapMan:35.1	:	:	:	:

Description

BnaA05g28770DBnaA05g28770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I5H6]

Coordinates

chrLK032599:-:217363..219229

Molecular Weight (calculated)

42588.1 Da

IEP (calculated)

5.872

GRAVY (calculated)

-0.650

Length

389 amino acids

Sequence
(BLAST)

001: MGNISSSGGD RRRRRRSNTL PTAAPPPPPH PSLPPPPATE PPPNRIVFAA ATPYPNPNQH YHQYPGYYPP PPGTMLPSPY DHHHHYPPPP PPPPPPHPYH
101: HPHPWTAGGR YPYAGAMVPQ PQPCVEHQKA VTIRNDVNLK KESLKLEPDP DCPGRFLVSF TFDATVSGRI TLIFFAKESE ECVLTATKED VLPPITMDFE
201: VGLGQKFKQP SGTGIDFSLF EEAELFKAAE ADVYPLAVKA EAAAAPGGDG EEAESVGSKN AQITQAVYEK DKGEIKIRVV KQILWVNETR YELQEIYGIG
301: NSVDGDDDSA DDANDPGKEC VICLSEPRDT TVLPCRHMCM CSGCAKVLRF QTNRCPICRQ PVERLLEIKV HGNSGSGNNT EQGGTGEQE

Best Arabidopsis Sequence Match ( AT3G09770.1 )
(BLAST)

001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE

Arabidopsis Description

LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.