CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02920
KRH05332
KRH15701
KRH18976
KRH52586
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09770.1	KRH02920	AT2G24762.1	22291198
AT3G09770.1	KRH18976	AT2G24762.1	22291198
AT3G09770.1	KRH02920	AT4G25760.1	22291198
AT3G09770.1	KRH18976	AT4G25760.1	22291198
AT3G09770.1	KRH02920	AT4G31730.1	22291198
AT3G09770.1	KRH18976	AT4G31730.1	22291198
AT3G09770.1	KRH02920	AT4G31730.1	24036454
AT3G09770.1	KRH18976	AT4G31730.1	24036454
AT3G53410.1	KRH52586	AT1G22920.1	21798944
AT3G53410.1	KRH61926	AT1G22920.1	21798944
AT3G53410.1	KRH02920	AT4G25760.1	22291198
AT3G53410.1	KRH18976	AT4G25760.1	22291198
AT3G53410.1	KRH02920	AT5G57685.1	22291198
AT3G53410.1	KRH18976	AT5G57685.1	22291198
AT5G03200.1	KRH02920	AT4G31730.1	22291198
AT5G03200.1	KRH18976	AT4G31730.1	22291198
AT5G03200.1	KRH05332	AT5G24920.1	22291198
AT5G03200.1	KRH15701	AT5G24920.1	22291198

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015671_P001	Maize	cytosol	54.64	23.56
KRH19856	Soybean	nucleus	83.51	23.21
KRH32464	Soybean	plastid	80.41	22.35
CDY41587	Canola	cytosol	53.61	18.91
VIT_08s0040g01940.t01	Wine grape	cytosol	63.92	17.13
KRH67682	Soybean	nucleus	57.73	16.42
KRG95976	Soybean	plastid	60.82	16.12
PGSC0003DMT400027153	Potato	nucleus, plastid	51.55	15.77
GSMUA_Achr7P01960_001	Banana	cytosol	48.45	15.36
GSMUA_Achr5P14690_001	Banana	cytosol	48.45	15.31
Solyc09g007700.2.1	Tomato	plastid	55.67	14.92
GSMUA_Achr11P...	Banana	cytosol	45.36	14.86
Solyc10g084100.1.1	Tomato	nucleus, plastid	48.45	14.73
PGSC0003DMT400004461	Potato	plastid	53.61	14.33
Bra028846.1-P	Field mustard	cytosol	39.18	14.29
CDY62899	Canola	cytosol	39.18	14.29
AT3G53410.1	Thale cress	cytosol	43.3	14.05
PGSC0003DMT400045328	Potato	plastid	50.52	14.0
CDY44348	Canola	cytosol	37.11	13.69
CDY13299	Canola	cytosol	41.24	13.61
Bra034086.1-P	Field mustard	nucleus, plastid	51.55	13.48
CDY41312	Canola	plastid	51.55	13.44
EER92535	Sorghum	nucleus	55.67	13.43
KRH22903	Soybean	mitochondrion, nucleus	42.27	13.27
CDY22203	Canola	mitochondrion, plastid	50.52	13.17
CDY67386	Canola	cytosol	39.18	13.15
Bra003133.1-P	Field mustard	nucleus	39.18	13.15
TraesCS7B01G390000.1	Wheat	mitochondrion	37.11	13.04
Zm00001d028475_P002	Maize	cytosol	53.61	13.0
Bra029788.1-P	Field mustard	nucleus, plastid	50.52	12.86
Os01t0374900-01	Rice	plastid	41.24	12.78
CDY44729	Canola	plastid	50.52	12.6
TraesCS4B01G220700.1	Wheat	cytosol	52.58	12.59
TraesCS4D01G221000.1	Wheat	cytosol	52.58	12.59
TraesCS7D01G473200.1	Wheat	cytosol	39.18	12.54
TraesCS7A01G486700.1	Wheat	cytosol	39.18	12.54
CDX70324	Canola	cytosol	21.65	12.5
Os10t0204100-01	Rice	nucleus	54.64	12.47
AT5G03200.1	Thale cress	mitochondrion	43.3	12.46
TraesCS4A01G083500.1	Wheat	cytosol	51.55	12.35
Solyc10g086080.1.1	Tomato	nucleus	42.27	12.24
AT3G09770.1	Thale cress	plastid	48.45	12.11
CDY10400	Canola	cytosol	37.11	12.08
HORVU7Hr1G109550.2	Barley	cytosol	40.21	11.85
HORVU0Hr1G008700.4	Barley	cytosol	51.55	11.79
GSMUA_Achr2P12340_001	Banana	nucleus	48.45	11.78
Bra009546.1-P	Field mustard	cytosol	34.02	11.11
Solyc04g054680.1.1	Tomato	cytosol	39.18	10.61
Os03t0254900-02	Rice	cytosol, endoplasmic reticulum	51.55	10.39
KRH51029	Soybean	mitochondrion	35.05	10.12
KRH02118	Soybean	cytosol, mitochondrion	24.74	8.7
KRH20904	Soybean	mitochondrion	32.99	8.63
KRH11381	Soybean	mitochondrion	31.96	8.31
Solyc04g054650.1.1	Tomato	cytosol	40.21	8.02
CDX70325	Canola	cytosol	6.19	5.83

Protein Annotations

EMBL:ACUP02010676	EnsemblPlants:KRH05126	EnsemblPlantsGene:GLYMA_17G208900	PANTHER:PTHR22996	PANTHER:PTHR22996:SF0	ProteinID:KRH05126
ProteinID:KRH05126.1	UniParc:UPI00029573A7	UniProt:K7MN03	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr17:+:34327196..34327489

Molecular Weight (calculated)

10573.3 Da

IEP (calculated)

4.436

GRAVY (calculated)

-0.504

Length

97 amino acids

Sequence
(BLAST)

1: MKENVLPLMT VNFQQGLGQK FKQPAGTGID FSTFEESELL KVGDMDVYPV AIKADASSSD HDESKSNETP SSGTSNSQIT QAVFEKEKGQ FVSCKCF

Best Arabidopsis Sequence Match ( AT3G09770.2 )
(BLAST)

001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMVSE S

Arabidopsis Description

LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.