Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G220700.1 | Wheat | cytosol | 99.26 | 99.26 |
| TraesCS4A01G083500.1 | Wheat | cytosol | 98.77 | 98.77 |
| HORVU0Hr1G008700.4 | Barley | cytosol | 93.09 | 88.92 |
| EER92535 | Sorghum | nucleus | 83.21 | 83.83 |
| Zm00001d015671_P001 | Maize | cytosol | 45.93 | 82.67 |
| Zm00001d028475_P002 | Maize | cytosol | 80.74 | 81.75 |
| GSMUA_Achr5P14690_001 | Banana | cytosol | 52.84 | 69.71 |
| GSMUA_Achr7P01960_001 | Banana | cytosol | 51.85 | 68.63 |
| GSMUA_Achr11P... | Banana | cytosol | 49.88 | 68.24 |
| VIT_08s0040g01940.t01 | Wine grape | cytosol | 60.25 | 67.4 |
| PGSC0003DMT400004461 | Potato | plastid | 60.0 | 66.94 |
| Solyc09g007700.2.1 | Tomato | plastid | 59.75 | 66.85 |
| Os03t0254900-02 | Rice | cytosol, endoplasmic reticulum | 77.53 | 65.28 |
| GSMUA_Achr2P12340_001 | Banana | nucleus | 63.95 | 64.91 |
| CDY41587 | Canola | cytosol | 43.7 | 64.36 |
| KRH32464 | Soybean | plastid | 55.31 | 64.18 |
| CDX70325 | Canola | cytosol | 16.3 | 64.08 |
| PGSC0003DMT400027153 | Potato | nucleus, plastid | 49.88 | 63.72 |
| Solyc10g084100.1.1 | Tomato | nucleus, plastid | 50.12 | 63.64 |
| KRH19856 | Soybean | nucleus | 54.81 | 63.61 |
| VIT_06s0004g02970.t01 | Wine grape | mitochondrion | 53.09 | 61.6 |
| Solyc10g086080.1.1 | Tomato | nucleus | 50.62 | 61.19 |
| PGSC0003DMT400045328 | Potato | plastid | 51.85 | 60.0 |
| AT3G09770.1 | Thale cress | plastid | 56.79 | 59.28 |
| Bra029788.1-P | Field mustard | nucleus, plastid | 55.06 | 58.53 |
| CDY41312 | Canola | plastid | 53.58 | 58.33 |
| CDY22203 | Canola | mitochondrion, plastid | 53.33 | 58.06 |
| Bra034086.1-P | Field mustard | nucleus, plastid | 53.09 | 57.95 |
| AT3G53410.1 | Thale cress | cytosol | 42.72 | 57.86 |
| CDY44729 | Canola | plastid | 55.31 | 57.58 |
| KRG95976 | Soybean | plastid | 51.85 | 57.38 |
| KRH67682 | Soybean | nucleus | 47.65 | 56.6 |
| CDY67386 | Canola | cytosol | 40.0 | 56.06 |
| Bra003133.1-P | Field mustard | nucleus | 40.0 | 56.06 |
| CDY13299 | Canola | cytosol | 39.51 | 54.42 |
| Bra009546.1-P | Field mustard | cytosol | 38.77 | 52.86 |
| KRH22903 | Soybean | mitochondrion, nucleus | 40.25 | 52.75 |
| KRH05126 | Soybean | cytosol | 12.59 | 52.58 |
| CDY44348 | Canola | cytosol | 33.83 | 52.09 |
| CDY10400 | Canola | cytosol | 38.27 | 52.01 |
| CDX70324 | Canola | cytosol | 21.23 | 51.19 |
| Bra028846.1-P | Field mustard | cytosol | 33.58 | 51.13 |
| CDY62899 | Canola | cytosol | 33.58 | 51.13 |
| AT5G03200.1 | Thale cress | mitochondrion | 42.22 | 50.74 |
| TraesCS7D01G473200.1 | Wheat | cytosol | 37.78 | 50.49 |
| Solyc04g054680.1.1 | Tomato | cytosol | 31.85 | 36.03 |
| Solyc04g054650.1.1 | Tomato | cytosol | 33.58 | 27.98 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G221000.1 | EnsemblPlantsGene:TraesCS4D01G221000 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22996 | PANTHER:PTHR22996:SF4 | PFAM:PF13920 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16789 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr4D:+:378259734..378262895
Molecular Weight (calculated)
44672.6 Da
IEP (calculated)
6.504
GRAVY (calculated)
-0.724
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNAGSNGGG GGPGHRRRSS GHGHGHHHQA PPPPQQPEAA PNRYVFAAAT PYPPQYPNPN PPQYYPQYGN YYPPPPPSVQ VPLPAPYDHH HRGAAPPPNV
101: PPTEFPPSVH SHNYPGWAGR YPYGLQPPMP TPYVEHQKAV TIRNDVNLKK ETLRIEPDEG CPGRFLVAFT FDATVAGSMT VYFFAKEELN CNLTAMKPDL
201: IKPVTVSFKE GLGQKFRQPS GTGIDFSVFE DSELLKQGGM EIYPLAVKAE TTLSADQPSE GEDQKPKTPN SQITQAVFEK KESGDYQVRV VSQILWVNGT
301: RYELQEIYGI GNSVEGDTDA NDPGKECVIC LSEPRDTTVL PCRHMCMCSE CAKVLRYQTT RCPICRQPVE RLLEIKVNNK AEEPPQQTSQ SPPLPPPPAL
401: HQEEV
101: PPTEFPPSVH SHNYPGWAGR YPYGLQPPMP TPYVEHQKAV TIRNDVNLKK ETLRIEPDEG CPGRFLVAFT FDATVAGSMT VYFFAKEELN CNLTAMKPDL
201: IKPVTVSFKE GLGQKFRQPS GTGIDFSVFE DSELLKQGGM EIYPLAVKAE TTLSADQPSE GEDQKPKTPN SQITQAVFEK KESGDYQVRV VSQILWVNGT
301: RYELQEIYGI GNSVEGDTDA NDPGKECVIC LSEPRDTTVL PCRHMCMCSE CAKVLRYQTT RCPICRQPVE RLLEIKVNNK AEEPPQQTSQ SPPLPPPPAL
401: HQEEV
001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE
Arabidopsis Description
LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.