Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G486700.1 | Wheat | cytosol | 93.73 | 93.73 |
| TraesCS7B01G390000.1 | Wheat | mitochondrion | 85.15 | 93.48 |
| HORVU7Hr1G109550.2 | Barley | cytosol | 90.43 | 83.28 |
| Os01t0374900-01 | Rice | plastid | 70.96 | 68.69 |
| CDX70325 | Canola | cytosol | 18.81 | 55.34 |
| GSMUA_Achr11P... | Banana | cytosol | 49.17 | 50.34 |
| CDY41587 | Canola | cytosol | 43.56 | 48.0 |
| GSMUA_Achr5P14690_001 | Banana | cytosol | 47.52 | 46.91 |
| Bra003133.1-P | Field mustard | nucleus | 43.89 | 46.02 |
| CDY67386 | Canola | cytosol | 43.89 | 46.02 |
| GSMUA_Achr7P01960_001 | Banana | cytosol | 46.2 | 45.75 |
| CDY13299 | Canola | cytosol | 43.23 | 44.56 |
| PGSC0003DMT400027153 | Potato | nucleus, plastid | 45.54 | 43.53 |
| AT3G53410.1 | Thale cress | cytosol | 42.9 | 43.48 |
| Solyc10g084100.1.1 | Tomato | nucleus, plastid | 44.88 | 42.63 |
| Solyc10g086080.1.1 | Tomato | nucleus | 46.53 | 42.09 |
| PGSC0003DMT400045328 | Potato | plastid | 48.51 | 42.0 |
| KRH32464 | Soybean | plastid | 48.18 | 41.83 |
| KRH19856 | Soybean | nucleus | 48.18 | 41.83 |
| CDY44348 | Canola | cytosol | 36.3 | 41.83 |
| Solyc09g007700.2.1 | Tomato | plastid | 49.51 | 41.44 |
| PGSC0003DMT400004461 | Potato | plastid | 49.51 | 41.32 |
| KRH22903 | Soybean | mitochondrion, nucleus | 41.91 | 41.1 |
| VIT_08s0040g01940.t01 | Wine grape | cytosol | 48.51 | 40.61 |
| CDY10400 | Canola | cytosol | 39.27 | 39.93 |
| CDY62899 | Canola | cytosol | 34.98 | 39.85 |
| Bra028846.1-P | Field mustard | cytosol | 34.98 | 39.85 |
| Bra009546.1-P | Field mustard | cytosol | 38.61 | 39.39 |
| KRH05126 | Soybean | cytosol | 12.54 | 39.18 |
| Bra034086.1-P | Field mustard | nucleus, plastid | 47.52 | 38.81 |
| CDY22203 | Canola | mitochondrion, plastid | 47.52 | 38.71 |
| VIT_06s0004g02970.t01 | Wine grape | mitochondrion | 44.55 | 38.68 |
| AT5G03200.1 | Thale cress | mitochondrion | 42.9 | 38.58 |
| CDY41312 | Canola | plastid | 46.86 | 38.17 |
| KRH67682 | Soybean | nucleus | 42.9 | 38.12 |
| GSMUA_Achr2P12340_001 | Banana | nucleus | 50.16 | 38.1 |
| Bra029788.1-P | Field mustard | nucleus, plastid | 47.52 | 37.8 |
| TraesCS4D01G221000.1 | Wheat | cytosol | 50.49 | 37.78 |
| KRG95976 | Soybean | plastid | 44.55 | 36.89 |
| CDY44729 | Canola | plastid | 47.19 | 36.76 |
| AT3G09770.1 | Thale cress | plastid | 45.87 | 35.82 |
| CDX70324 | Canola | cytosol | 18.48 | 33.33 |
| Solyc04g054680.1.1 | Tomato | cytosol | 30.36 | 25.7 |
| Solyc04g054650.1.1 | Tomato | cytosol | 34.98 | 21.81 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G473200.1 | EnsemblPlantsGene:TraesCS7D01G473200 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22996 | PANTHER:PTHR22996:SF6 | PFAM:PF13920 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16789 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr7D:+:586484765..586487649
Molecular Weight (calculated)
33681.1 Da
IEP (calculated)
6.640
GRAVY (calculated)
-0.507
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNAGSSGRP NLPPPRPHLH GVPPPYYHQY PPWRPGAAAP PPVPFPTHVE RHRAVAVSAG VNVKGHTLRL DRDDDGGHLL AFSFDADAPG SITVYFFAQE
101: GDDCVLKGTK ENLLKPVTVT FKEGHGQEFR QPSGTGIKLS MFEESELTKV GEDRVFPLAF KVEVGVPSKQ ELEKKHDAED SKSLVKFAVF VKKDSAEYGI
201: NIVQQILWVN GTRYVLQEIY GIGDRNTADR NVNEDDSGKE CVVCLTEPRD TTVLPCRHMC LCRECAQTLR FQTNKCPMCR QPVESLLEIK VDIMPRHHEG
301: GDQ
101: GDDCVLKGTK ENLLKPVTVT FKEGHGQEFR QPSGTGIKLS MFEESELTKV GEDRVFPLAF KVEVGVPSKQ ELEKKHDAED SKSLVKFAVF VKKDSAEYGI
201: NIVQQILWVN GTRYVLQEIY GIGDRNTADR NVNEDDSGKE CVVCLTEPRD TTVLPCRHMC LCRECAQTLR FQTNKCPMCR QPVESLLEIK VDIMPRHHEG
301: GDQ
001: MGISFSNNNR RRDNNNRRHL HHYPPPPPYY YLDPPPPPPP FPPHYDYNYS NYHLSPPLPP QPQINSCSYG HYHYHPQPPQ YFTTAQPNWW GPMMRPAYYC
101: PPQPQTQPPK PYLEQQNAKK VRNDVNVHRD TVRLEVDDLV PGHHLVSFVF DALFDGSFTI TFFAKEEPNC TIIPQFPEVY SPTRFHFQKG PGQKFLQPSG
201: TGTDLSFFVL DDLSKPLEED VYPLVISAET IISPNSISEQ SSVHKQVTQA VLEKDNDGSF KVKVVKQILW IEGVRYELRE LYGSTTQGAA SGLDESGSGT
301: ECVICMTEAK DTAVLPCRHL CMCSDCAKEL RLQSNKCPIC RQPIEELLEI KMNSSDEQH
101: PPQPQTQPPK PYLEQQNAKK VRNDVNVHRD TVRLEVDDLV PGHHLVSFVF DALFDGSFTI TFFAKEEPNC TIIPQFPEVY SPTRFHFQKG PGQKFLQPSG
201: TGTDLSFFVL DDLSKPLEED VYPLVISAET IISPNSISEQ SSVHKQVTQA VLEKDNDGSF KVKVVKQILW IEGVRYELRE LYGSTTQGAA SGLDESGSGT
301: ECVICMTEAK DTAVLPCRHL CMCSDCAKEL RLQSNKCPIC RQPIEELLEI KMNSSDEQH
Arabidopsis Description
LUL4Probable E3 ubiquitin-protein ligase LUL4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LA32]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.