Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 2
- extracellular 2
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G178900.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 75.29 | 74.42 |
| TraesCS6A01G150800.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 65.29 | 66.47 |
| HORVU6Hr1G030050.2 | Barley | peroxisome, vacuole | 71.18 | 65.41 |
| GSMUA_Achr7P16360_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 21.18 | 35.64 |
| Zm00001d053729_P001 | Maize | plastid | 30.0 | 35.17 |
| TraesCS7D01G485400.1 | Wheat | golgi, mitochondrion, plasma membrane | 41.76 | 34.8 |
| KRH02920 | Soybean | endoplasmic reticulum, nucleus, plasma membrane | 33.53 | 34.76 |
| AT4G25760.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 25.88 | 34.11 |
| TraesCS7D01G485100.1 | Wheat | endoplasmic reticulum, nucleus, peroxisome | 40.59 | 33.82 |
| AT5G57685.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 29.41 | 33.78 |
| CDY34757 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 29.41 | 33.33 |
| CDY13451 | Canola | plasma membrane | 25.29 | 33.08 |
| PGSC0003DMT400067619 | Potato | mitochondrion | 35.29 | 32.97 |
| Bra006808.1-P | Field mustard | plasma membrane | 28.24 | 32.88 |
| VIT_04s0008g07370.t01 | Wine grape | plastid | 32.94 | 32.75 |
| EES06373 | Sorghum | endoplasmic reticulum, nucleus, plasma membrane, plastid | 38.82 | 32.67 |
| Bra013917.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 26.47 | 32.61 |
| CDY68098 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 26.47 | 32.61 |
| Solyc08g006520.1.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane, plastid | 34.12 | 32.58 |
| TraesCS7D01G485200.1 | Wheat | vacuole | 40.59 | 32.39 |
| CDX94417 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 25.88 | 31.88 |
| Bra019142.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 25.88 | 31.88 |
| CDY72356 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 25.88 | 31.88 |
| CDX92732 | Canola | plasma membrane | 25.29 | 31.85 |
| AT2G24762.1 | Thale cress | golgi, plasma membrane, plastid | 28.82 | 31.41 |
| Bra007834.1-P | Field mustard | golgi, mitochondrion, plasma membrane | 27.65 | 31.33 |
| Bra002707.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 27.06 | 31.29 |
| Bra002705.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 27.06 | 31.29 |
| TraesCS4D01G079800.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 30.0 | 31.29 |
| TraesCS7D01G485300.1 | Wheat | endoplasmic reticulum, nucleus, plasma membrane | 39.41 | 31.02 |
| Bra011294.1-P | Field mustard | mitochondrion | 30.0 | 30.72 |
| CDX68780 | Canola | mitochondrion | 29.41 | 30.12 |
| CDX76795 | Canola | golgi, mitochondrion, plastid | 26.47 | 30.0 |
| CDX72326 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 28.82 | 29.88 |
| Bra023987.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 28.82 | 29.88 |
| AT4G31730.1 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 27.65 | 29.75 |
| Bra020422.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 25.88 | 29.73 |
| Zm00001d015470_P001 | Maize | plastid | 33.53 | 29.23 |
| PGSC0003DMT400075273 | Potato | cytosol, endoplasmic reticulum, plasma membrane, plastid | 25.29 | 28.48 |
| Solyc12g096480.1.1 | Tomato | plastid | 23.53 | 26.32 |
| PGSC0003DMT400075274 | Potato | plastid | 23.53 | 25.48 |
| Solyc12g096490.1.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid | 23.53 | 24.39 |
| KRH18976 | Soybean | plasma membrane | 30.59 | 22.22 |
| Bra020423.1-P | Field mustard | cytosol | 11.76 | 18.35 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G140800.1 | EnsemblPlantsGene:TraesCS6D01G140800 | PANTHER:PTHR33228 | PANTHER:PTHR33228:SF17 | SEG:seg | TMHMM:TMhelix |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:110331899..110332411
Molecular Weight (calculated)
17094.9 Da
IEP (calculated)
4.215
GRAVY (calculated)
-0.158
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPGAEYPMA HGPAAAPRST WQTPVPYLFG GLATMLALIA LSLLTLACSY WKLSGGLAGP DEDQPPGSDG EKGSAAGPAR EWLGHVVVIM AGDEQPSFLA
101: TPASMTSSAA DGGAETAAGA AACCAACRSE ERKMEDAREA GAQPAGSEDD ARPASPSELP SSSTSSVISS
101: TPASMTSSAA DGGAETAAGA AACCAACRSE ERKMEDAREA GAQPAGSEDD ARPASPSELP SSSTSSVISS
001: MQTMEGRQYN YQDSINASSS MVVPHSPWHS PVPYLFGGLA AMLALICVAL LILACSYWRL SGSAERDLEA GDDAKPDNDT NKTKHTEMPE KFLVIMAGDV
101: RPTYLATPAT RSEQSCTCGD HNEEEGRRG
101: RPTYLATPAT RSEQSCTCGD HNEEEGRRG
Arabidopsis Description
GDU2Protein GLUTAMINE DUMPER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW07]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.