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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • plasma membrane 3
  • extracellular 1
  • golgi 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plasma membrane, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70324
CDX70325
CDY10400
CDY13299
CDY22203
CDY41312
CDY41587
CDY44348
CDY44729
CDY62899
CDY67386

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G25760.1 CDY22203 AT3G09770.1 22291198
AT4G25760.1 CDY41312 AT3G09770.1 22291198
AT4G25760.1 CDY41587 AT3G09770.1 22291198
AT4G25760.1 CDY44729 AT3G09770.1 22291198
AT4G25760.1 CDY13299 AT3G53410.1 22291198
AT4G25760.1 CDY67386 AT3G53410.1 22291198
AT4G25760.1 CDX70324 AT5G03200.1 22291198
AT4G25760.1 CDX70325 AT5G03200.1 22291198
AT4G25760.1 CDY10400 AT5G03200.1 22291198
AT4G25760.1 CDY44348 AT5G03200.1 22291198
AT4G25760.1 CDY62899 AT5G03200.1 22291198
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY72356 Canola endoplasmic reticulum, mitochondrion, plasma membrane 94.07 92.03
CDX94417 Canola endoplasmic reticulum, mitochondrion, plasma membrane 80.74 78.99
CDY68098 Canola endoplasmic reticulum, mitochondrion, plasma membrane 80.0 78.26
AT4G25760.1 Thale cress cytosol, endoplasmic reticulum, plasma membrane 67.41 70.54
CDY13451 Canola plasma membrane 40.0 41.54
CDX76795 Canola golgi, mitochondrion, plastid 41.48 37.33
CDY34757 Canola endoplasmic reticulum, nucleus, plasma membrane 40.74 36.67
TraesCS4B01G081100.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 43.7 36.65
KRH02920 Soybean endoplasmic reticulum, nucleus, plasma membrane 43.7 35.98
CDX80475 Canola cytosol, endoplasmic reticulum, plasma membrane 36.3 35.77
GSMUA_Achr7P16360_001 Banana endoplasmic reticulum, extracellular, plasma membrane 26.67 35.64
EES13936 Sorghum endoplasmic reticulum, extracellular, plasma membrane 45.93 35.03
CDX72326 Canola endoplasmic reticulum, mitochondrion, plasma membrane 42.22 34.76
Zm00001d036703_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 37.04 34.48
TraesCS4D01G079800.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 41.48 34.36
CDX68780 Canola mitochondrion 42.22 34.34
Os08t0446800-01 Rice endoplasmic reticulum, extracellular, plasma membrane 45.19 33.89
GSMUA_Achr1P23400_001 Banana cytosol, mitochondrion, plasma membrane 39.26 33.76
GSMUA_Achr11P... Banana extracellular, golgi, mitochondrion, plastid 37.04 32.89
GSMUA_Achr7P05080_001 Banana endoplasmic reticulum, plasma membrane, plastid 36.3 32.89
VIT_04s0008g07370.t01 Wine grape plastid 41.48 32.75
TraesCS4A01G234200.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 40.74 32.35
Zm00001d053729_P001 Maize plastid 34.07 31.72
Zm00001d032115_P001 Maize extracellular, golgi, plasma membrane 41.48 31.46
HORVU4Hr1G013760.1 Barley golgi, mitochondrion, plasma membrane, plastid 42.96 30.85
Zm00001d046927_P001 Maize endoplasmic reticulum, mitochondrion, plasma membrane 41.48 30.43
GSMUA_Achr10P... Banana golgi, plasma membrane, plastid 37.78 30.36
Zm00001d050079_P001 Maize extracellular, golgi, plasma membrane 40.0 28.42
TraesCS7A01G498100.1 Wheat endoplasmic reticulum 38.52 27.51
EER88756 Sorghum endoplasmic reticulum, extracellular, plasma membrane 39.26 27.46
Os06t0654400-00 Rice endoplasmic reticulum, nucleus, plasma membrane 37.04 27.17
HORVU7Hr1G111310.2 Barley endoplasmic reticulum, mitochondrion, plasma membrane 36.3 27.07
TraesCS6A01G150800.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 33.33 26.95
EER90144 Sorghum endoplasmic reticulum, plasma membrane, plastid 37.78 26.29
TraesCS6B01G178900.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 33.33 26.16
TraesCS7B01G405000.1 Wheat endoplasmic reticulum, mitochondrion, plasma membrane 38.52 25.62
TraesCS7D01G485400.1 Wheat golgi, mitochondrion, plasma membrane 38.52 25.49
TraesCS6D01G140800.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 31.85 25.29
HORVU6Hr1G030050.2 Barley peroxisome, vacuole 34.07 24.86
EES06373 Sorghum endoplasmic reticulum, nucleus, plasma membrane, plastid 37.04 24.75
TraesCS7D01G485300.1 Wheat endoplasmic reticulum, nucleus, plasma membrane 39.26 24.54
EES13610 Sorghum plastid 32.59 24.31
TraesCS7A01G497800.1 Wheat endoplasmic reticulum, nucleus, plasma membrane 37.04 24.27
TraesCS7A01G497900.1 Wheat endoplasmic reticulum 38.52 24.07
TraesCS7B01G404900.1 Wheat endoplasmic reticulum, nucleus, plasma membrane 38.52 24.07
TraesCS7D01G485200.1 Wheat vacuole 37.78 23.94
KRH18976 Soybean plasma membrane 41.48 23.93
HORVU1Hr1G003060.2 Barley endoplasmic reticulum, mitochondrion, plasma membrane 37.78 23.83
TraesCS7A01G498000.1 Wheat endoplasmic reticulum, mitochondrion, plasma membrane 34.81 23.62
Zm00001d015470_P001 Maize plastid 34.07 23.59
Zm00001d024198_P001 Maize plastid 30.37 23.43
TraesCS7D01G485100.1 Wheat endoplasmic reticulum, nucleus, peroxisome 34.81 23.04
HORVU1Hr1G003080.1 Barley endoplasmic reticulum, nucleus, plasma membrane 36.3 22.58
HORVU7Hr1G111350.1 Barley endoplasmic reticulum, nucleus, plasma membrane 36.3 22.58
HORVU7Hr1G111320.1 Barley endoplasmic reticulum, peroxisome, plastid 35.56 22.54
HORVU1Hr1G003070.1 Barley endoplasmic reticulum, peroxisome, plastid 35.56 22.54
Os08t0249200-00 Rice plastid 31.85 21.83
TraesCS7B01G404600.1 Wheat endoplasmic reticulum 36.3 21.59
HORVU0Hr1G022370.1 Barley mitochondrion 35.56 19.43
TraesCS7B01G404700.1 Wheat cytosol, endoplasmic reticulum, plastid 37.04 19.01
Protein Annotations
EnsemblPlants:CDX92732EnsemblPlantsGene:GSBRNA2T00154552001GO:A0A078DV10PANTHER:PTHR33228PANTHER:PTHR33228:SF5ProteinID:CDX92732
ProteinID:CDX92732.1SEG:segTMHMM:TMhelixUniParc:UPI0004EEB48FMapMan:35.1:
Description
BnaC07g39900D
Coordinates
chrLK031873:+:550176..550583
Molecular Weight (calculated)
14809.3 Da
IEP (calculated)
5.525
GRAVY (calculated)
-0.462
Length
135 amino acids
Sequence
(BLAST)
001: MEGRQYYKNH KGNNHSSSMV VPQSPWHSPV PYLFGGLAAM FALIAFALLI LACSYWRLSG SSERDLEDGD DGKSDCDTHK DRTTAMPEKF LVIMAGDVKP
101: TYLATPANRS DYSCTCGDHK EEVASDQVVG QNTGT
Best Arabidopsis Sequence Match ( AT4G25760.1 )
(BLAST)
001: MQTMEGRQYN YQDSINASSS MVVPHSPWHS PVPYLFGGLA AMLALICVAL LILACSYWRL SGSAERDLEA GDDAKPDNDT NKTKHTEMPE KFLVIMAGDV
101: RPTYLATPAT RSEQSCTCGD HNEEEGRRG
Arabidopsis Description
GDU2Protein GLUTAMINE DUMPER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW07]
SUBAcon: [cytosol,plasma membrane,endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.