Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plasma membrane, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 2
- extracellular 2
- golgi 1
- plasma membrane 2
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G013760.1 | Barley | golgi, mitochondrion, plasma membrane, plastid | 72.67 | 62.23 |
| TraesCS4A01G234200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 65.22 | 61.76 |
| Os08t0446800-01 | Rice | endoplasmic reticulum, extracellular, plasma membrane | 60.87 | 54.44 |
| TraesCS4D01G079800.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 51.55 | 50.92 |
| EES13936 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 54.66 | 49.72 |
| Zm00001d032115_P001 | Maize | extracellular, golgi, plasma membrane | 52.8 | 47.75 |
| Bra002705.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 41.61 | 45.58 |
| Bra002707.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 41.61 | 45.58 |
| Zm00001d050079_P001 | Maize | extracellular, golgi, plasma membrane | 53.42 | 45.26 |
| AT4G25760.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 36.02 | 44.96 |
| AT5G57685.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 40.37 | 43.92 |
| Bra006808.1-P | Field mustard | plasma membrane | 39.75 | 43.84 |
| CDX92732 | Canola | plasma membrane | 36.65 | 43.7 |
| Bra019142.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 37.27 | 43.48 |
| CDY72356 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 37.27 | 43.48 |
| Bra013917.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 36.65 | 42.75 |
| CDY68098 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 36.02 | 42.03 |
| GSMUA_Achr11P... | Banana | extracellular, golgi, mitochondrion, plastid | 39.13 | 41.45 |
| CDX94417 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 35.4 | 41.3 |
| Bra020422.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 37.89 | 41.22 |
| AT2G24762.1 | Thale cress | golgi, plasma membrane, plastid | 39.75 | 41.03 |
| KRH02920 | Soybean | endoplasmic reticulum, nucleus, plasma membrane | 40.37 | 39.63 |
| CDY13451 | Canola | plasma membrane | 29.81 | 36.92 |
| AT4G31730.1 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 35.4 | 36.08 |
| CDY34757 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 32.92 | 35.33 |
| CDX76795 | Canola | golgi, mitochondrion, plastid | 32.3 | 34.67 |
| CDX72326 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 34.78 | 34.15 |
| Bra007834.1-P | Field mustard | golgi, mitochondrion, plasma membrane | 31.68 | 34.0 |
| PGSC0003DMT400075273 | Potato | cytosol, endoplasmic reticulum, plasma membrane, plastid | 31.68 | 33.77 |
| TraesCS6B01G178900.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 36.02 | 33.72 |
| Bra023987.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 34.16 | 33.54 |
| VIT_04s0008g07370.t01 | Wine grape | plastid | 35.4 | 33.33 |
| Solyc12g096480.1.1 | Tomato | plastid | 31.06 | 32.89 |
| Solyc08g006520.1.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane, plastid | 36.02 | 32.58 |
| TraesCS7B01G405000.1 | Wheat | endoplasmic reticulum, mitochondrion, plasma membrane | 39.75 | 31.53 |
| Bra011294.1-P | Field mustard | mitochondrion | 32.3 | 31.33 |
| PGSC0003DMT400067619 | Potato | mitochondrion | 35.4 | 31.32 |
| Solyc12g096490.1.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid | 31.68 | 31.1 |
| CDX68780 | Canola | mitochondrion | 31.68 | 30.72 |
| Bra020423.1-P | Field mustard | cytosol | 19.88 | 29.36 |
| PGSC0003DMT400075274 | Potato | plastid | 28.57 | 29.3 |
| TraesCS7B01G404900.1 | Wheat | endoplasmic reticulum, nucleus, plasma membrane | 37.89 | 28.24 |
| KRH18976 | Soybean | plasma membrane | 40.99 | 28.21 |
| TraesCS7B01G404600.1 | Wheat | endoplasmic reticulum | 37.27 | 26.43 |
| TraesCS7B01G404700.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 34.78 | 21.29 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G081100.1 | EnsemblPlantsGene:TraesCS4B01G081100 | PANTHER:PTHR33228 | PANTHER:PTHR33228:SF5 | SEG:seg | TMHMM:TMhelix |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:78661828..78662571
Molecular Weight (calculated)
16793.8 Da
IEP (calculated)
5.999
GRAVY (calculated)
-0.249
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPGAGFNAT AAATNAAVAP LAAGAAHSAW HSPVPYLFGG LAPMLGLIAF ALLILACSYW KLSGYLEGSA GRGDEEGSAT DGAKPVASDL PPAAWEEKVL
101: VVMAGDVKPT YLATPMSSRD RSSKGEEEEK KVSMAAMAST KDAGNSEHSQ NRRERDDHHL P
101: VVMAGDVKPT YLATPMSSRD RSSKGEEEEK KVSMAAMAST KDAGNSEHSQ NRRERDDHHL P
001: MEGRQYYPPR ENVEGNRTTM GGGPHSPWHS PVPYLFGGLA AMLGLIAFAL LILACSYWRL SGYLDGEENQ SRERDLEVGD VKPDKTAVKP VALPEKFLVI
101: MAGNVKPTYL ATPSVKTCTC DDDDDEDDDV EGSDQVVPRS SESNGETH
101: MAGNVKPTYL ATPSVKTCTC DDDDDEDDDV EGSDQVVPRS SESNGETH
Arabidopsis Description
GDU3Protein GLUTAMINE DUMPER 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH5]
SUBAcon: [cytosol,plasma membrane,endoplasmic reticulum]
SUBAcon: [cytosol,plasma membrane,endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.