Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- endoplasmic reticulum 2
- cytosol 2
- extracellular 1
- vacuole 1
- plasma membrane 2
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400004461 | |
| PGSC0003DMT400027153 | |
| PGSC0003DMT400045328 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G24920.1 | PGSC0003DMT400004461 | AT3G09770.1 | 22291198 |
| AT5G24920.1 | PGSC0003DMT400027153 | AT3G09770.1 | 22291198 |
| AT5G24920.1 | PGSC0003DMT400045328 | AT3G09770.1 | 22291198 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g096490.1.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid | 76.16 | 70.12 |
| PGSC0003DMT400075274 | Potato | plastid | 41.72 | 40.13 |
| AT5G24920.1 | Thale cress | golgi, plasma membrane, plastid | 34.44 | 39.69 |
| Bra009804.1-P | Field mustard | extracellular | 25.17 | 38.0 |
| PGSC0003DMT400067619 | Potato | mitochondrion | 45.7 | 37.91 |
| CDX80475 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 33.77 | 37.23 |
| VIT_04s0008g07370.t01 | Wine grape | plastid | 40.4 | 35.67 |
| PGSC0003DMT400003750 | Potato | plastid | 23.18 | 34.31 |
| GSMUA_Achr7P05080_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 33.77 | 34.23 |
| GSMUA_Achr11P... | Banana | extracellular, golgi, mitochondrion, plastid | 34.44 | 34.21 |
| Zm00001d036703_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 32.45 | 33.79 |
| GSMUA_Achr10P... | Banana | golgi, plasma membrane, plastid | 36.42 | 32.74 |
| PGSC0003DMT400003749 | Potato | plastid | 22.52 | 32.69 |
| TraesCS4D01G079800.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 35.1 | 32.52 |
| GSMUA_Achr7P16360_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 21.19 | 31.68 |
| TraesCS4B01G081100.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 33.77 | 31.68 |
| GSMUA_Achr1P23400_001 | Banana | cytosol, mitochondrion, plasma membrane | 32.45 | 31.21 |
| EES13936 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 36.42 | 31.07 |
| Zm00001d032115_P001 | Maize | extracellular, golgi, plasma membrane | 36.42 | 30.9 |
| PGSC0003DMT400075948 | Potato | plastid | 25.17 | 30.89 |
| PGSC0003DMT400003752 | Potato | plastid | 25.17 | 30.89 |
| TraesCS4A01G234200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 34.44 | 30.59 |
| Os08t0446800-01 | Rice | endoplasmic reticulum, extracellular, plasma membrane | 36.42 | 30.56 |
| Zm00001d050079_P001 | Maize | extracellular, golgi, plasma membrane | 38.41 | 30.53 |
| Zm00001d053729_P001 | Maize | plastid | 28.48 | 29.66 |
| HORVU7Hr1G111310.2 | Barley | endoplasmic reticulum, mitochondrion, plasma membrane | 35.1 | 29.28 |
| Os06t0654400-00 | Rice | endoplasmic reticulum, nucleus, plasma membrane | 34.44 | 28.26 |
| HORVU4Hr1G013760.1 | Barley | golgi, mitochondrion, plasma membrane, plastid | 35.1 | 28.19 |
| TraesCS6A01G150800.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 31.13 | 28.14 |
| TraesCS7A01G498100.1 | Wheat | endoplasmic reticulum | 35.1 | 28.04 |
| PGSC0003DMT400070631 | Potato | nucleus | 35.76 | 27.98 |
| TraesCS7B01G405000.1 | Wheat | endoplasmic reticulum, mitochondrion, plasma membrane | 36.42 | 27.09 |
| TraesCS7D01G485100.1 | Wheat | endoplasmic reticulum, nucleus, peroxisome | 35.76 | 26.47 |
| KRH15701 | Soybean | plastid | 31.79 | 26.37 |
| TraesCS6B01G178900.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 29.8 | 26.16 |
| TraesCS7D01G485400.1 | Wheat | golgi, mitochondrion, plasma membrane | 35.1 | 25.98 |
| TraesCS7B01G404900.1 | Wheat | endoplasmic reticulum, nucleus, plasma membrane | 37.09 | 25.93 |
| TraesCS7A01G497900.1 | Wheat | endoplasmic reticulum | 37.09 | 25.93 |
| HORVU1Hr1G003060.2 | Barley | endoplasmic reticulum, mitochondrion, plasma membrane | 36.42 | 25.7 |
| KRH05332 | Soybean | plastid | 29.8 | 25.57 |
| Zm00001d046927_P001 | Maize | endoplasmic reticulum, mitochondrion, plasma membrane | 31.13 | 25.54 |
| HORVU6Hr1G030050.2 | Barley | peroxisome, vacuole | 31.13 | 25.41 |
| TraesCS6D01G140800.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 28.48 | 25.29 |
| Zm00001d024198_P001 | Maize | plastid | 29.14 | 25.14 |
| Zm00001d015470_P001 | Maize | plastid | 32.45 | 25.13 |
| TraesCS7D01G485300.1 | Wheat | endoplasmic reticulum, nucleus, plasma membrane | 35.76 | 25.0 |
| EER88756 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 31.79 | 24.87 |
| EES06373 | Sorghum | endoplasmic reticulum, nucleus, plasma membrane, plastid | 33.11 | 24.75 |
| EER90144 | Sorghum | endoplasmic reticulum, plasma membrane, plastid | 31.79 | 24.74 |
| HORVU1Hr1G003080.1 | Barley | endoplasmic reticulum, nucleus, plasma membrane | 35.1 | 24.42 |
| HORVU7Hr1G111350.1 | Barley | endoplasmic reticulum, nucleus, plasma membrane | 35.1 | 24.42 |
| TraesCS7B01G404600.1 | Wheat | endoplasmic reticulum | 36.42 | 24.23 |
| Os08t0249200-00 | Rice | plastid | 31.13 | 23.86 |
| EES13610 | Sorghum | plastid | 28.48 | 23.76 |
| TraesCS7A01G498000.1 | Wheat | endoplasmic reticulum, mitochondrion, plasma membrane | 31.13 | 23.62 |
| HORVU1Hr1G003070.1 | Barley | endoplasmic reticulum, peroxisome, plastid | 33.11 | 23.47 |
| HORVU7Hr1G111320.1 | Barley | endoplasmic reticulum, peroxisome, plastid | 33.11 | 23.47 |
| TraesCS7A01G497800.1 | Wheat | endoplasmic reticulum, nucleus, plasma membrane | 31.79 | 23.3 |
| HORVU0Hr1G022370.1 | Barley | mitochondrion | 37.75 | 23.08 |
| TraesCS7D01G485200.1 | Wheat | vacuole | 32.45 | 23.0 |
| TraesCS7B01G404700.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 31.79 | 18.25 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400075273 | EnsemblPlantsGene:PGSC0003DMG400029276 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR33228 |
| PANTHER:PTHR33228:SF5 | PGSC:PGSC0003DMG400029276 | TMHMM:TMhelix | UniParc:UPI000294BBC3 | UniProt:M1CUV3 | MapMan:35.1 |
Description
GDU1 [Source:PGSC_GENE;Acc:PGSC0003DMG400029276]
Coordinates
chr12:-:58139827..58140650
Molecular Weight (calculated)
16282.3 Da
IEP (calculated)
4.488
GRAVY (calculated)
-0.220
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAIEPTVKT TFSPAESFQR SPWHSPAAYL FIGVAAMLGL IAFALVILAC SYLKRSGETR DGGDDLESGA GEKSAGDLCK VVPIYEEKIV VIMAGDLNPT
101: FLATPISSKS SSFGDENGSK IEKKLEMENG ELADEKLKDQ VNMDQNHEQS H
101: FLATPISSKS SSFGDENGSK IEKKLEMENG ELADEKLKDQ VNMDQNHEQS H
001: MRPLSIKPTS LDVARHATSV ESFGNHRPPI SPWHSPVPYL FGGLAAMLGL IAFALLILAC SYWRLSTSGD DSGERVDEEK ESRSGVKAAS AACEEKVLVI
101: MAGDDLPRFL ATPAANKCMC GHEGRMVIFK EDGIGAGEEK MGDREKAKEN EETTSQ
101: MAGDDLPRFL ATPAANKCMC GHEGRMVIFK EDGIGAGEEK MGDREKAKEN EETTSQ
Arabidopsis Description
GDU4Protein GLUTAMINE DUMPER 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8A0]
SUBAcon: [plasma membrane,golgi,plastid]
SUBAcon: [plasma membrane,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.