Factsheet for PGSC0003DMT400003749

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089450.1.1	Tomato	plastid	76.92	81.63
PGSC0003DMT400003750	Potato	plastid	38.46	39.22
PGSC0003DMT400003752	Potato	plastid	37.5	31.71
PGSC0003DMT400075948	Potato	plastid	37.5	31.71
KRH01448	Soybean	plastid	35.58	30.08
KRH45164	Soybean	plastid	33.65	27.78
PGSC0003DMT400075273	Potato	cytosol, endoplasmic reticulum, plasma membrane, plastid	32.69	22.52
PGSC0003DMT400075274	Potato	plastid	32.69	21.66
PGSC0003DMT400067619	Potato	mitochondrion	37.5	21.43
PGSC0003DMT400070631	Potato	nucleus	33.65	18.13

Protein Annotations

EnsemblPlants:PGSC0003DMT400003749	EnsemblPlantsGene:PGSC0003DMG400001476	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR33228
PANTHER:PTHR33228:SF5	PGSC:PGSC0003DMG400001476	SEG:seg	TMHMM:TMhelix	UniParc:UPI00029587EB	UniProt:M0ZM96
MapMan:35.2	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400001476]

Coordinates

chr2:+:45144045..45145103

Molecular Weight (calculated)

11409.1 Da

IEP (calculated)

9.304

GRAVY (calculated)

0.366

Length

104 amino acids

Sequence
(BLAST)

001: MSLSNCSSPY SCSVWRWNST VPYLFGGLAF IFLLIFVALV ILACVYCRKK SRNSSVSRGE NNGGTMIPTN VHNQIDMIVT MKPKIVVIMA GDDKPSYLAT
101: PSLA

Best Arabidopsis Sequence Match ( AT4G25760.1 )
(BLAST)

001: MQTMEGRQYN YQDSINASSS MVVPHSPWHS PVPYLFGGLA AMLALICVAL LILACSYWRL SGSAERDLEA GDDAKPDNDT NKTKHTEMPE KFLVIMAGDV
101: RPTYLATPAT RSEQSCTCGD HNEEEGRRG

Arabidopsis Description

GDU2Protein GLUTAMINE DUMPER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW07]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.