Factsheet for PGSC0003DMT400003750

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
endoplasmic reticulum 2
plasma membrane 3
nucleus 1
extracellular 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089460.1.1	Tomato	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	85.29	86.14
PGSC0003DMT400003749	Potato	plastid	39.22	38.46
PGSC0003DMT400003752	Potato	plastid	32.35	26.83
PGSC0003DMT400075948	Potato	plastid	32.35	26.83
PGSC0003DMT400075273	Potato	cytosol, endoplasmic reticulum, plasma membrane, plastid	34.31	23.18
PGSC0003DMT400067619	Potato	mitochondrion	36.27	20.33
PGSC0003DMT400075274	Potato	plastid	29.41	19.11
PGSC0003DMT400070631	Potato	nucleus	31.37	16.58

Protein Annotations

EnsemblPlants:PGSC0003DMT400003750	EnsemblPlantsGene:PGSC0003DMG400001477	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR33228
PANTHER:PTHR33228:SF5	PGSC:PGSC0003DMG400001477	SEG:seg	TMHMM:TMhelix	UniParc:UPI000295DCB9	UniProt:M0ZM97
MapMan:35.2	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400001477]

Coordinates

chr2:+:45141074..45141685

Molecular Weight (calculated)

11108.5 Da

IEP (calculated)

8.234

GRAVY (calculated)

0.166

Length

102 amino acids

Sequence
(BLAST)

001: MRDLGNTPSS SSFWTWRSPL PYLFGSLGIM LLLIVISLII LACSFHKRFS SNSDPEKSAC PPPNNTIVEM SPSIVVIMAG DHKPTHIGVP ISDKPTYYSS
101: AA

Best Arabidopsis Sequence Match ( AT4G25760.1 )
(BLAST)

001: MQTMEGRQYN YQDSINASSS MVVPHSPWHS PVPYLFGGLA AMLALICVAL LILACSYWRL SGSAERDLEA GDDAKPDNDT NKTKHTEMPE KFLVIMAGDV
101: RPTYLATPAT RSEQSCTCGD HNEEEGRRG

Arabidopsis Description

GDU2Protein GLUTAMINE DUMPER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW07]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.