Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- golgi 1
- mitochondrion 1
- endoplasmic reticulum 1
- nucleus 1
- plasma membrane 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400004461 | |
| PGSC0003DMT400027153 | |
| PGSC0003DMT400045328 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G24920.1 | PGSC0003DMT400004461 | AT3G09770.1 | 22291198 |
| AT5G24920.1 | PGSC0003DMT400027153 | AT3G09770.1 | 22291198 |
| AT5G24920.1 | PGSC0003DMT400045328 | AT3G09770.1 | 22291198 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g096480.1.1 | Tomato | plastid | 63.06 | 65.13 |
| PGSC0003DMT400075273 | Potato | cytosol, endoplasmic reticulum, plasma membrane, plastid | 40.13 | 41.72 |
| VIT_04s0008g07370.t01 | Wine grape | plastid | 38.85 | 35.67 |
| GSMUA_Achr11P... | Banana | extracellular, golgi, mitochondrion, plastid | 33.12 | 34.21 |
| Bra009804.1-P | Field mustard | extracellular | 21.66 | 34.0 |
| Zm00001d036703_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 30.57 | 33.1 |
| PGSC0003DMT400003749 | Potato | plastid | 21.66 | 32.69 |
| TraesCS4D01G079800.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 33.76 | 32.52 |
| PGSC0003DMT400067619 | Potato | mitochondrion | 37.58 | 32.42 |
| AT5G24920.1 | Thale cress | golgi, plasma membrane, plastid | 26.75 | 32.06 |
| CDX80475 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 26.75 | 30.66 |
| PGSC0003DMT400075948 | Potato | plastid | 23.57 | 30.08 |
| PGSC0003DMT400003752 | Potato | plastid | 23.57 | 30.08 |
| Os08t0446800-01 | Rice | endoplasmic reticulum, extracellular, plasma membrane | 34.39 | 30.0 |
| GSMUA_Achr1P23400_001 | Banana | cytosol, mitochondrion, plasma membrane | 29.94 | 29.94 |
| GSMUA_Achr10P... | Banana | golgi, plasma membrane, plastid | 31.85 | 29.76 |
| GSMUA_Achr7P16360_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 19.11 | 29.7 |
| PGSC0003DMT400003750 | Potato | plastid | 19.11 | 29.41 |
| Zm00001d032115_P001 | Maize | extracellular, golgi, plasma membrane | 33.12 | 29.21 |
| EES13936 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 32.48 | 28.81 |
| Os06t0654400-00 | Rice | endoplasmic reticulum, nucleus, plasma membrane | 33.76 | 28.8 |
| TraesCS4B01G081100.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 29.3 | 28.57 |
| KRH15701 | Soybean | plastid | 33.12 | 28.57 |
| PGSC0003DMT400070631 | Potato | nucleus | 34.39 | 27.98 |
| TraesCS4A01G234200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 29.94 | 27.65 |
| EES06373 | Sorghum | endoplasmic reticulum, nucleus, plasma membrane, plastid | 35.03 | 27.23 |
| Zm00001d053729_P001 | Maize | plastid | 24.84 | 26.9 |
| Zm00001d050079_P001 | Maize | extracellular, golgi, plasma membrane | 32.48 | 26.84 |
| KRH05332 | Soybean | plastid | 29.94 | 26.7 |
| Zm00001d046927_P001 | Maize | endoplasmic reticulum, mitochondrion, plasma membrane | 31.21 | 26.63 |
| EER88756 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 31.85 | 25.91 |
| EER90144 | Sorghum | endoplasmic reticulum, plasma membrane, plastid | 31.85 | 25.77 |
| GSMUA_Achr7P05080_001 | Banana | endoplasmic reticulum, plasma membrane, plastid | 24.2 | 25.5 |
| TraesCS6A01G150800.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 26.75 | 25.15 |
| TraesCS6B01G178900.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 27.39 | 25.0 |
| HORVU4Hr1G013760.1 | Barley | golgi, mitochondrion, plasma membrane, plastid | 29.3 | 24.47 |
| Os08t0249200-00 | Rice | plastid | 30.57 | 24.37 |
| TraesCS7A01G498100.1 | Wheat | endoplasmic reticulum | 29.3 | 24.34 |
| TraesCS7A01G497800.1 | Wheat | endoplasmic reticulum, nucleus, plasma membrane | 31.85 | 24.27 |
| HORVU1Hr1G003060.2 | Barley | endoplasmic reticulum, mitochondrion, plasma membrane | 32.48 | 23.83 |
| HORVU7Hr1G111310.2 | Barley | endoplasmic reticulum, mitochondrion, plasma membrane | 27.39 | 23.76 |
| EES13610 | Sorghum | plastid | 27.39 | 23.76 |
| TraesCS6D01G140800.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 25.48 | 23.53 |
| TraesCS7D01G485200.1 | Wheat | vacuole | 31.85 | 23.47 |
| Zm00001d024198_P001 | Maize | plastid | 26.11 | 23.43 |
| HORVU1Hr1G003070.1 | Barley | endoplasmic reticulum, peroxisome, plastid | 31.21 | 23.0 |
| HORVU7Hr1G111320.1 | Barley | endoplasmic reticulum, peroxisome, plastid | 31.21 | 23.0 |
| TraesCS7A01G497900.1 | Wheat | endoplasmic reticulum | 31.21 | 22.69 |
| TraesCS7B01G405000.1 | Wheat | endoplasmic reticulum, mitochondrion, plasma membrane | 29.3 | 22.66 |
| TraesCS7A01G498000.1 | Wheat | endoplasmic reticulum, mitochondrion, plasma membrane | 28.66 | 22.61 |
| TraesCS7B01G404900.1 | Wheat | endoplasmic reticulum, nucleus, plasma membrane | 30.57 | 22.22 |
| HORVU7Hr1G111350.1 | Barley | endoplasmic reticulum, nucleus, plasma membrane | 30.57 | 22.12 |
| HORVU1Hr1G003080.1 | Barley | endoplasmic reticulum, nucleus, plasma membrane | 30.57 | 22.12 |
| TraesCS7D01G485100.1 | Wheat | endoplasmic reticulum, nucleus, peroxisome | 28.66 | 22.06 |
| TraesCS7D01G485400.1 | Wheat | golgi, mitochondrion, plasma membrane | 28.66 | 22.06 |
| HORVU6Hr1G030050.2 | Barley | peroxisome, vacuole | 25.48 | 21.62 |
| Zm00001d015470_P001 | Maize | plastid | 26.75 | 21.54 |
| TraesCS7D01G485300.1 | Wheat | endoplasmic reticulum, nucleus, plasma membrane | 29.3 | 21.3 |
| TraesCS7B01G404600.1 | Wheat | endoplasmic reticulum | 28.66 | 19.82 |
| TraesCS7B01G404700.1 | Wheat | cytosol, endoplasmic reticulum, plastid | 31.21 | 18.63 |
| HORVU0Hr1G022370.1 | Barley | mitochondrion | 27.39 | 17.41 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400075274 | EnsemblPlantsGene:PGSC0003DMG400029277 | EntrezGene:107059762 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| ncoils:Coil | PANTHER:PTHR33228 | PANTHER:PTHR33228:SF5 | PGSC:PGSC0003DMG400029277 | RefSeq:XP_015162156.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI00029559AE | UniProt:M1CUV4 | MapMan:35.1 | : | : |
Description
GDU1 [Source:PGSC_GENE;Acc:PGSC0003DMG400029277]
Coordinates
chr12:-:58136293..58137089
Molecular Weight (calculated)
17028.2 Da
IEP (calculated)
4.591
GRAVY (calculated)
-0.136
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTVSTFTTA SPSISPSAIV QKSPWHSPAL YLFAGVASML VLITFALVIL ACSYWRRSGY PRENGDAESG AGEKSADDVF KASPVLEVKI VVIMAGDLNP
101: TFLATPISSR GNSFGAGDKI EKKLEKETEE FDDEKSKDEV IAMEVMDQAH EESQIGH
101: TFLATPISSR GNSFGAGDKI EKKLEKETEE FDDEKSKDEV IAMEVMDQAH EESQIGH
001: MQTMEGRQYN YQDSINASSS MVVPHSPWHS PVPYLFGGLA AMLALICVAL LILACSYWRL SGSAERDLEA GDDAKPDNDT NKTKHTEMPE KFLVIMAGDV
101: RPTYLATPAT RSEQSCTCGD HNEEEGRRG
101: RPTYLATPAT RSEQSCTCGD HNEEEGRRG
Arabidopsis Description
GDU2Protein GLUTAMINE DUMPER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW07]
SUBAcon: [cytosol,plasma membrane,endoplasmic reticulum]
SUBAcon: [cytosol,plasma membrane,endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.