Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 2
- extracellular 2
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G079800.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 70.0 | 73.01 |
| TraesCS4B01G081100.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 61.76 | 65.22 |
| Zm00001d032115_P001 | Maize | extracellular, golgi, plasma membrane | 53.53 | 51.12 |
| Os08t0446800-01 | Rice | endoplasmic reticulum, extracellular, plasma membrane | 53.53 | 50.56 |
| HORVU4Hr1G013760.1 | Barley | golgi, mitochondrion, plasma membrane, plastid | 54.71 | 49.47 |
| Zm00001d050079_P001 | Maize | extracellular, golgi, plasma membrane | 53.53 | 47.89 |
| EES13936 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 49.41 | 47.46 |
| Bra002705.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 37.65 | 43.54 |
| Bra002707.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 37.65 | 43.54 |
| GSMUA_Achr11P... | Banana | extracellular, golgi, mitochondrion, plastid | 38.82 | 43.42 |
| CDY72356 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 34.71 | 42.75 |
| Bra019142.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 34.71 | 42.75 |
| AT4G25760.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 32.35 | 42.64 |
| Bra006808.1-P | Field mustard | plasma membrane | 36.47 | 42.47 |
| AT5G57685.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 36.47 | 41.89 |
| CDX92732 | Canola | plasma membrane | 32.35 | 40.74 |
| CDY68098 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 32.94 | 40.58 |
| Bra013917.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 32.94 | 40.58 |
| CDX94417 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 32.94 | 40.58 |
| Bra020422.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane | 34.71 | 39.86 |
| CDX68780 | Canola | mitochondrion | 37.65 | 38.55 |
| CDY13451 | Canola | plasma membrane | 29.41 | 38.46 |
| AT2G24762.1 | Thale cress | golgi, plasma membrane, plastid | 35.29 | 38.46 |
| KRH02920 | Soybean | endoplasmic reticulum, nucleus, plasma membrane | 37.06 | 38.41 |
| TraesCS7A01G498100.1 | Wheat | endoplasmic reticulum | 41.76 | 37.57 |
| CDY34757 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 32.94 | 37.33 |
| CDX76795 | Canola | golgi, mitochondrion, plastid | 32.94 | 37.33 |
| TraesCS6A01G150800.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 36.47 | 37.13 |
| AT4G31730.1 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 33.53 | 36.08 |
| VIT_04s0008g07370.t01 | Wine grape | plastid | 35.88 | 35.67 |
| Solyc12g096480.1.1 | Tomato | plastid | 31.76 | 35.53 |
| Bra007834.1-P | Field mustard | golgi, mitochondrion, plasma membrane | 31.18 | 35.33 |
| TraesCS7A01G497800.1 | Wheat | endoplasmic reticulum, nucleus, plasma membrane | 42.35 | 34.95 |
| PGSC0003DMT400075273 | Potato | cytosol, endoplasmic reticulum, plasma membrane, plastid | 30.59 | 34.44 |
| Solyc08g006520.1.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane, plastid | 35.29 | 33.71 |
| PGSC0003DMT400067619 | Potato | mitochondrion | 35.88 | 33.52 |
| TraesCS7A01G497900.1 | Wheat | endoplasmic reticulum | 41.76 | 32.87 |
| Solyc12g096490.1.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid | 30.59 | 31.71 |
| CDX72326 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane | 30.59 | 31.71 |
| TraesCS7A01G498000.1 | Wheat | endoplasmic reticulum, mitochondrion, plasma membrane | 37.06 | 31.66 |
| Bra011294.1-P | Field mustard | mitochondrion | 30.59 | 31.33 |
| Bra023987.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 30.0 | 31.1 |
| PGSC0003DMT400075274 | Potato | plastid | 27.65 | 29.94 |
| Bra020423.1-P | Field mustard | cytosol | 17.65 | 27.52 |
| KRH18976 | Soybean | plasma membrane | 37.65 | 27.35 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G234200.1 | EnsemblPlantsGene:TraesCS4A01G234200 | PANTHER:PTHR33228 | PANTHER:PTHR33228:SF17 | SEG:seg | TMHMM:TMhelix |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:543340553..543341184
Molecular Weight (calculated)
17675.0 Da
IEP (calculated)
6.349
GRAVY (calculated)
0.025
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPGAGFNAT AAATKAAVAP LAAGAAHSAW HSPVPYLFGG LAAMLGLIAF ALLILACSYW KLSGYLEGSA GRGHDEGSAT DGAKLVASDQ APAAWEEKVL
101: VVMAGDVEPT YLATPMSSRD RSSKGEEEEK KVSVVAMASI KDAGNGEHSR NQMESVTPSH VFRGVLQFLQ
101: VVMAGDVEPT YLATPMSSRD RSSKGEEEEK KVSVVAMASI KDAGNGEHSR NQMESVTPSH VFRGVLQFLQ
001: MEGRQYYPPR ENVEGNRTTM GGGPHSPWHS PVPYLFGGLA AMLGLIAFAL LILACSYWRL SGYLDGEENQ SRERDLEVGD VKPDKTAVKP VALPEKFLVI
101: MAGNVKPTYL ATPSVKTCTC DDDDDEDDDV EGSDQVVPRS SESNGETH
101: MAGNVKPTYL ATPSVKTCTC DDDDDEDDDV EGSDQVVPRS SESNGETH
Arabidopsis Description
GDU3Protein GLUTAMINE DUMPER 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH5]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.