Factsheet for VIT_04s0008g07370.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
endoplasmic reticulum 1
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0040g01940.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24762.1	VIT_08s0040g01940.t01	AT3G09770.1	22291198
AT2G24762.1	VIT_08s0040g01940.t01	AT5G03200.1	22291198
AT4G25760.1	VIT_08s0040g01940.t01	AT3G09770.1	22291198
AT4G25760.1	VIT_08s0040g01940.t01	AT3G53410.1	22291198
AT4G25760.1	VIT_08s0040g01940.t01	AT5G03200.1	22291198
AT4G31730.1	VIT_08s0040g01940.t01	AT3G09770.1	22291198
AT4G31730.1	VIT_08s0040g01940.t01	AT3G09770.1	24036454
AT4G31730.1	VIT_08s0040g01940.t01	AT5G03200.1	22291198
AT5G57685.1	VIT_08s0040g01940.t01	AT3G09770.1	22291198
AT5G57685.1	VIT_08s0040g01940.t01	AT3G53410.1	22291198
AT5G57685.1	VIT_08s0040g01940.t01	AT5G03200.1	22291198

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13451	Canola	plasma membrane	34.5	45.38
PGSC0003DMT400067619	Potato	mitochondrion	45.61	42.86
Solyc08g006520.1.1	Tomato	cytosol, endoplasmic reticulum, plasma membrane, plastid	43.86	42.13
GSMUA_Achr11P...	Banana	extracellular, golgi, mitochondrion, plastid	37.43	42.11
CDX92732	Canola	plasma membrane	32.75	41.48
Zm00001d036703_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	35.09	41.38
PGSC0003DMT400075273	Potato	cytosol, endoplasmic reticulum, plasma membrane, plastid	35.67	40.4
EES13936	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	41.52	40.11
Zm00001d032115_P001	Maize	extracellular, golgi, plasma membrane	41.52	39.89
AT5G57685.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	33.92	39.19
PGSC0003DMT400075274	Potato	plastid	35.67	38.85
Solyc12g096480.1.1	Tomato	plastid	34.5	38.82
AT4G25760.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	29.24	38.76
AT4G31730.1	Thale cress	endoplasmic reticulum, plasma membrane, plastid	35.67	38.61
Bra020422.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane	33.33	38.51
AT2G24762.1	Thale cress	golgi, plasma membrane, plastid	35.09	38.46
CDX94417	Canola	endoplasmic reticulum, mitochondrion, plasma membrane	30.99	38.41
Bra019142.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane	30.99	38.41
Bra013917.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane	30.99	38.41
CDY68098	Canola	endoplasmic reticulum, mitochondrion, plasma membrane	30.99	38.41
CDY72356	Canola	endoplasmic reticulum, mitochondrion, plasma membrane	30.99	38.41
Os08t0446800-01	Rice	endoplasmic reticulum, extracellular, plasma membrane	40.35	38.33
GSMUA_Achr10P...	Banana	golgi, plasma membrane, plastid	37.43	38.1
TraesCS4D01G079800.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	36.26	38.04
KRH02920	Soybean	endoplasmic reticulum, nucleus, plasma membrane	36.26	37.8
CDX72326	Canola	endoplasmic reticulum, mitochondrion, plasma membrane	36.26	37.8
Bra006808.1-P	Field mustard	plasma membrane	32.16	37.67
GSMUA_Achr7P16360_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	22.22	37.62
CDY34757	Canola	endoplasmic reticulum, nucleus, plasma membrane	32.75	37.33
Bra023987.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	35.67	37.2
Bra011294.1-P	Field mustard	mitochondrion	35.67	36.75
Bra002707.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane	31.58	36.73
Bra002705.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane	31.58	36.73
TraesCS7A01G498100.1	Wheat	endoplasmic reticulum	40.35	36.51
Os06t0654400-00	Rice	endoplasmic reticulum, nucleus, plasma membrane	39.18	36.41
Zm00001d050079_P001	Maize	extracellular, golgi, plasma membrane	40.35	36.32
VIT_14s0083g00670.t01	Wine grape	plastid	21.05	36.0
TraesCS4A01G234200.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	35.67	35.88
TraesCS4B01G081100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	33.33	35.4
Bra007834.1-P	Field mustard	golgi, mitochondrion, plasma membrane	30.99	35.33
Zm00001d053729_P001	Maize	plastid	29.82	35.17
CDX76795	Canola	golgi, mitochondrion, plastid	30.41	34.67
TraesCS7D01G485400.1	Wheat	golgi, mitochondrion, plasma membrane	40.94	34.31
Zm00001d046927_P001	Maize	endoplasmic reticulum, mitochondrion, plasma membrane	36.84	34.24
TraesCS6A01G150800.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	33.33	34.13
TraesCS7B01G405000.1	Wheat	endoplasmic reticulum, mitochondrion, plasma membrane	40.35	33.99
GSMUA_Achr1P23400_001	Banana	cytosol, mitochondrion, plasma membrane	30.99	33.76
CDX68780	Canola	mitochondrion	32.75	33.73
HORVU7Hr1G111310.2	Barley	endoplasmic reticulum, mitochondrion, plasma membrane	35.67	33.7
EER88756	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	37.43	33.16
TraesCS6D01G140800.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	32.75	32.94
Solyc12g096490.1.1	Tomato	endoplasmic reticulum, plasma membrane, plastid	31.58	32.93
HORVU4Hr1G013760.1	Barley	golgi, mitochondrion, plasma membrane, plastid	35.67	32.45
GSMUA_Achr7P05080_001	Banana	endoplasmic reticulum, plasma membrane, plastid	28.07	32.21
TraesCS6B01G178900.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	32.16	31.98
EER90144	Sorghum	endoplasmic reticulum, plasma membrane, plastid	36.26	31.96
HORVU6Hr1G030050.2	Barley	peroxisome, vacuole	32.75	30.27
VIT_14s0083g00680.t01	Wine grape	endoplasmic reticulum, plasma membrane	21.05	30.25
TraesCS7D01G485100.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	35.67	29.9
TraesCS7A01G498000.1	Wheat	endoplasmic reticulum, mitochondrion, plasma membrane	33.92	29.15
KRH18976	Soybean	plasma membrane	39.77	29.06
EES06373	Sorghum	endoplasmic reticulum, nucleus, plasma membrane, plastid	33.92	28.71
EES13610	Sorghum	plastid	29.82	28.18
TraesCS7A01G497800.1	Wheat	endoplasmic reticulum, nucleus, plasma membrane	33.92	28.16
Zm00001d024198_P001	Maize	plastid	28.66	28.0
HORVU1Hr1G003070.1	Barley	endoplasmic reticulum, peroxisome, plastid	34.5	27.7
HORVU7Hr1G111320.1	Barley	endoplasmic reticulum, peroxisome, plastid	34.5	27.7
HORVU1Hr1G003060.2	Barley	endoplasmic reticulum, mitochondrion, plasma membrane	34.5	27.57
TraesCS7A01G497900.1	Wheat	endoplasmic reticulum	34.5	27.31
TraesCS7B01G404600.1	Wheat	endoplasmic reticulum	36.26	27.31
Os08t0249200-00	Rice	plastid	30.99	26.9
TraesCS7D01G485200.1	Wheat	vacuole	33.33	26.76
HORVU7Hr1G111350.1	Barley	endoplasmic reticulum, nucleus, plasma membrane	33.92	26.73
HORVU1Hr1G003080.1	Barley	endoplasmic reticulum, nucleus, plasma membrane	33.92	26.73
TraesCS7B01G404900.1	Wheat	endoplasmic reticulum, nucleus, plasma membrane	33.33	26.39
TraesCS7D01G485300.1	Wheat	endoplasmic reticulum, nucleus, plasma membrane	32.75	25.93
HORVU0Hr1G022370.1	Barley	mitochondrion	36.84	25.51
Zm00001d015470_P001	Maize	plastid	28.66	25.13
TraesCS7B01G404700.1	Wheat	cytosol, endoplasmic reticulum, plastid	34.5	22.43
Bra020423.1-P	Field mustard	cytosol	12.87	20.18

Protein Annotations

ArrayExpress:VIT_04s0008g07370	EMBL:FN595231	EnsemblPlants:VIT_04s0008g07370.t01	EnsemblPlantsGene:VIT_04s0008g07370	EntrezGene:100263835	EntrezGene:LOC100263835
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	ncoils:Coil	PANTHER:PTHR33228	PANTHER:PTHR33228:SF5
ProteinID:CCB46907	ProteinID:CCB46907.1	RefSeq:XP_002263122	RefSeq:XP_002263122.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0001983046	UniProt:F6H3M0	wikigene:100263835	wikigene:LOC100263835	MapMan:35.2	:

Description

No Description!

Coordinates

chr4:-:7736921..7737487

Molecular Weight (calculated)

18545.4 Da

IEP (calculated)

5.076

GRAVY (calculated)

-0.771

Length

171 amino acids

Sequence
(BLAST)

001: MRTGATFNAT AASPATVQRS PWHSPVPYLF GGLAAMLGLI AFALLILACS YWRFSNGHLD NGESGGERDL ESGDDGKGGD ARKVGPVVYE EKIVVIMAGD
101: EKPRFLATPM SSRASSFGDN NGKSDGEEKK EQEKAEKSGE KLKEDMNHYE QTATSHNGET QHTHEAQEQN Q

Best Arabidopsis Sequence Match ( AT5G57685.1 )
(BLAST)

001: MEGRQYYPPR ENVEGNRTTM GGGPHSPWHS PVPYLFGGLA AMLGLIAFAL LILACSYWRL SGYLDGEENQ SRERDLEVGD VKPDKTAVKP VALPEKFLVI
101: MAGNVKPTYL ATPSVKTCTC DDDDDEDDDV EGSDQVVPRS SESNGETH

Arabidopsis Description

GDU3Protein GLUTAMINE DUMPER 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH5]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.