Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 2
- cytosol 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003133.1-P | Field mustard | nucleus | 99.65 | 99.65 |
| CDY13299 | Canola | cytosol | 90.66 | 89.12 |
| AT3G53410.1 | Thale cress | cytosol | 70.59 | 68.23 |
| CDX70325 | Canola | cytosol | 22.49 | 63.11 |
| CDY41587 | Canola | cytosol | 53.63 | 56.36 |
| CDY13950 | Canola | cytosol | 18.34 | 53.54 |
| Zm00001d015671_P001 | Maize | cytosol | 40.48 | 52.0 |
| GSMUA_Achr11P... | Banana | cytosol | 52.94 | 51.69 |
| GSMUA_Achr5P14690_001 | Banana | cytosol | 52.94 | 49.84 |
| GSMUA_Achr7P01960_001 | Banana | cytosol | 51.9 | 49.02 |
| KRH19856 | Soybean | nucleus | 57.79 | 47.85 |
| PGSC0003DMT400027153 | Potato | nucleus, plastid | 52.25 | 47.63 |
| KRH32464 | Soybean | plastid | 57.44 | 47.56 |
| CDY44348 | Canola | cytosol | 43.25 | 47.53 |
| Solyc10g084100.1.1 | Tomato | nucleus, plastid | 51.56 | 46.71 |
| Solyc10g086080.1.1 | Tomato | nucleus | 53.29 | 45.97 |
| TraesCS7B01G390000.1 | Wheat | mitochondrion | 43.6 | 45.65 |
| Solyc09g007700.2.1 | Tomato | plastid | 56.75 | 45.3 |
| PGSC0003DMT400004461 | Potato | plastid | 56.75 | 45.18 |
| CDY41312 | Canola | plastid | 58.13 | 45.16 |
| PGSC0003DMT400045328 | Potato | plastid | 54.67 | 45.14 |
| CDY62899 | Canola | cytosol | 41.52 | 45.11 |
| CDY22203 | Canola | mitochondrion, plastid | 57.44 | 44.62 |
| VIT_08s0040g01940.t01 | Wine grape | cytosol | 55.71 | 44.48 |
| CDY10400 | Canola | cytosol | 45.67 | 44.3 |
| CDY13958 | Canola | cytosol | 29.41 | 44.27 |
| TraesCS7A01G486700.1 | Wheat | cytosol | 46.02 | 43.89 |
| TraesCS7D01G473200.1 | Wheat | cytosol | 46.02 | 43.89 |
| CDY44729 | Canola | plastid | 57.79 | 42.93 |
| KRH67682 | Soybean | nucleus | 50.17 | 42.52 |
| Os01t0374900-01 | Rice | plastid | 45.67 | 42.17 |
| GSMUA_Achr2P12340_001 | Banana | nucleus | 57.09 | 41.35 |
| EER92535 | Sorghum | nucleus | 56.75 | 40.8 |
| KRG95976 | Soybean | plastid | 51.56 | 40.71 |
| Zm00001d028475_P002 | Maize | cytosol | 56.06 | 40.5 |
| TraesCS4B01G220700.1 | Wheat | cytosol | 56.4 | 40.25 |
| TraesCS4A01G083500.1 | Wheat | cytosol | 56.06 | 40.0 |
| TraesCS4D01G221000.1 | Wheat | cytosol | 56.06 | 40.0 |
| CDX70324 | Canola | cytosol | 23.18 | 39.88 |
| HORVU7Hr1G109550.2 | Barley | cytosol | 45.33 | 39.82 |
| KRH05126 | Soybean | cytosol | 13.15 | 39.18 |
| Os10t0204100-01 | Rice | nucleus | 55.71 | 37.88 |
| HORVU0Hr1G008700.4 | Barley | cytosol | 55.36 | 37.74 |
| CDX92559 | Canola | mitochondrion | 44.98 | 34.95 |
| CDY05235 | Canola | mitochondrion | 43.94 | 34.79 |
| CDY24715 | Canola | mitochondrion | 43.25 | 34.44 |
| CDY13949 | Canola | mitochondrion | 44.29 | 33.16 |
| Os03t0254900-02 | Rice | cytosol, endoplasmic reticulum | 54.33 | 32.64 |
| Solyc04g054680.1.1 | Tomato | cytosol | 35.64 | 28.77 |
| Solyc04g054650.1.1 | Tomato | cytosol | 39.1 | 23.25 |
Protein Annotations
| EnsemblPlants:CDY67386 | EnsemblPlantsGene:GSBRNA2T00062877001 | Gene3D:3.30.40.10 | GO:A0A078JNU4 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22996 | PANTHER:PTHR22996:SF0 | PFAM:PF13920 | PFscan:PS50089 |
| ProteinID:CDY67386 | ProteinID:CDY67386.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EED129 |
| UniProt:A0A078JNU4 | MapMan:35.1 | : | : | : | : |
Description
BnaAnng24180DBnaAnng24180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JNU4]
Coordinates
chrLK036053:+:1510..2639
Molecular Weight (calculated)
31995.0 Da
IEP (calculated)
6.611
GRAVY (calculated)
-0.482
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNVTGGIRR DPPPYTNPNH PPPLQYHQYY QGYYPYHNPQ GATRAPYPQV AYVEHQEAVT IKNDVNLNKD TLRFEPDESN PGKFLLSFTF DANVPGSITV
101: MFFAKEGKDC DLIATKADLF PSTTVSFPKG LGQKFKQPCG TGIELSALSE AELVEANESD VYHVAVKAEG KTPNRQITHA VLEKEKGEYK AKVVKQVLWV
201: NGSKYVLKEI YGIGNTADGS GGEDETESGK ECVICLTEPR DTTVLPCRHM CMCSGCAKLL RFQTNLCPIC RQPVNRLLEI TVNTNVSNN
101: MFFAKEGKDC DLIATKADLF PSTTVSFPKG LGQKFKQPCG TGIELSALSE AELVEANESD VYHVAVKAEG KTPNRQITHA VLEKEKGEYK AKVVKQVLWV
201: NGSKYVLKEI YGIGNTADGS GGEDETESGK ECVICLTEPR DTTVLPCRHM CMCSGCAKLL RFQTNLCPIC RQPVNRLLEI TVNTNVSNN
001: MGNVISGGSR PENHRDRTSP PYPNPNAQYQ GNYPSPYQDC ARYPYGEMAS PVQYVEHQEA VTIRNDINLK KETLRLEPDE QNPGKFLLSF TFDASVPGSI
101: TVMFFAKEGK DCNLIATKED LFPSTQVSFA KGLEQRFKQA CGTGIDFSDM SEADLVEANE TDVYHVAVKA EVVSEDDHPE SGTPNRQITH VVLEKDHKGE
201: YKARVVKQIL WVNGNRYVLQ EIYGIGNTVD DNGEDANERG KECVICLSEP RDTTVLPCRH MCMCSGCAKL LRFQTNLCPI CRQPVDRLLE ITVNNNDRN
101: TVMFFAKEGK DCNLIATKED LFPSTQVSFA KGLEQRFKQA CGTGIDFSDM SEADLVEANE TDVYHVAVKA EVVSEDDHPE SGTPNRQITH VVLEKDHKGE
201: YKARVVKQIL WVNGNRYVLQ EIYGIGNTVD DNGEDANERG KECVICLSEP RDTTVLPCRH MCMCSGCAKL LRFQTNLCPI CRQPVDRLLE ITVNNNDRN
Arabidopsis Description
LUL2Probable E3 ubiquitin-protein ligase LUL2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFH6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.