Factsheet for Solyc09g007700.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g073150.2.1
Solyc08g006520.1.1
Solyc11g017300.1.1
Solyc12g096480.1.1
Solyc12g096490.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53410.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT3G53410.1	Solyc11g017300.1.1	AT1G22920.1	21798944
AT5G03200.1	Solyc08g006520.1.1	AT5G24920.1	22291198
AT5G03200.1	Solyc12g096480.1.1	AT5G24920.1	22291198
AT5G03200.1	Solyc12g096490.1.1	AT5G24920.1	22291198

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004461	Potato	plastid	98.07	97.8
Solyc10g084100.1.1	Tomato	nucleus, plastid	68.23	77.43
VIT_08s0040g01940.t01	Wine grape	cytosol	76.24	76.24
Solyc10g086080.1.1	Tomato	nucleus	68.78	74.33
KRH32464	Soybean	plastid	67.13	69.63
CDY41587	Canola	cytosol	52.49	69.09
KRH19856	Soybean	nucleus	65.19	67.62
GSMUA_Achr5P14690_001	Banana	cytosol	56.08	66.12
GSMUA_Achr11P...	Banana	cytosol	53.04	64.86
GSMUA_Achr7P01960_001	Banana	cytosol	54.14	64.05
Zm00001d015671_P001	Maize	cytosol	39.5	63.56
CDX70325	Canola	cytosol	17.96	63.11
GSMUA_Achr2P12340_001	Banana	nucleus	69.34	62.91
CDY41312	Canola	plastid	63.81	62.1
Bra034086.1-P	Field mustard	nucleus, plastid	63.54	61.99
CDY22203	Canola	mitochondrion, plastid	63.54	61.83
AT3G09770.1	Thale cress	plastid	65.75	61.34
KRH67682	Soybean	nucleus	57.46	61.0
Bra029788.1-P	Field mustard	nucleus, plastid	63.81	60.63
Zm00001d028475_P002	Maize	cytosol	66.85	60.5
EER92535	Sorghum	nucleus	67.13	60.45
KRG95976	Soybean	plastid	61.05	60.38
TraesCS4B01G220700.1	Wheat	cytosol	67.13	60.0
AT3G53410.1	Thale cress	cytosol	49.45	59.87
TraesCS4D01G221000.1	Wheat	cytosol	66.85	59.75
TraesCS4A01G083500.1	Wheat	cytosol	66.85	59.75
CDY44729	Canola	plastid	63.54	59.13
Os10t0204100-01	Rice	nucleus	67.4	57.41
CDY67386	Canola	cytosol	45.3	56.75
Bra003133.1-P	Field mustard	nucleus	45.3	56.75
KRH05126	Soybean	cytosol	14.92	55.67
HORVU0Hr1G008700.4	Barley	cytosol	64.64	55.19
CDY13299	Canola	cytosol	44.75	55.1
Bra009546.1-P	Field mustard	cytosol	43.37	52.86
CDY44348	Canola	cytosol	38.12	52.47
CDY62899	Canola	cytosol	38.4	52.26
Bra028846.1-P	Field mustard	cytosol	38.4	52.26
AT5G03200.1	Thale cress	mitochondrion	48.62	52.23
CDY10400	Canola	cytosol	42.82	52.01
TraesCS7B01G390000.1	Wheat	mitochondrion	38.67	50.72
Solyc01g080080.2.1	Tomato	nucleus	21.55	50.0
CDX70324	Canola	cytosol	23.2	50.0
TraesCS7D01G473200.1	Wheat	cytosol	41.44	49.51
TraesCS7A01G486700.1	Wheat	cytosol	40.88	48.84
Os03t0254900-02	Rice	cytosol, endoplasmic reticulum	63.54	47.82
Os01t0374900-01	Rice	plastid	40.06	46.33
HORVU7Hr1G109550.2	Barley	cytosol	40.88	44.98
Solyc04g054680.1.1	Tomato	cytosol	40.33	40.78
Solyc01g098750.2.1	Tomato	plastid	41.99	39.38
Solyc04g054650.1.1	Tomato	cytosol	41.99	31.28

Protein Annotations

EnsemblPlants:Solyc09g007700.2.1	EnsemblPlantsGene:Solyc09g007700.2	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	PFAM:PF13920	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000276B8FF	UniProt:K4CQF9	MapMan:35.1	:

Description

No Description!

Coordinates

chr9:-:1244231..1249357

Molecular Weight (calculated)

40106.3 Da

IEP (calculated)

5.276

GRAVY (calculated)

-0.593

Length

362 amino acids

Sequence
(BLAST)

001: MGNMGSSGVN GRRRSSSRRS HPPPSPQPQP PQPEINANRY VFAAATPYPT QYPNPNAPPY YQYPGYYPPP PAAMPVPLPA SYDHHHRMDP GHANWVNGRY
101: PCGPMMPPPA PYVEHQKAVT IRNDVNLKKE TLRIEPDEAN PGKYLVAFTF DATVPGSMTV IFFAKEGEDC CLTPMKESLL PPVTFEFQKG LAQKFRQPSG
201: TGIDFSMFEE AELSKDSEAD VYPLAVKAEA TLDNPSESED GSAASGSTNS QITQAVFEKD KGEYHVRAVK QILWVNDMRY ELQEIFGIGN SVESDFDGND
301: PGKECVICLS EPRDTTVLPC RHMCMCSGCA KVLRFQTNRC PICRQPVERL LEIKVSEGAA EE

Best Arabidopsis Sequence Match ( AT3G09770.1 )
(BLAST)

001: MGNISSSGGE GRRRRRRNHT AAPPPPPPPP SSSLPPPPLP TEIQANPIVF AAVTPYPNPN PNPVYQYPAS YYHHPPPGAM PLPPYDHHLQ HHPPHPYHNH
101: SWAPVAMARY PYAGHMMAQP TPYVEHQKAV TIRNDVNLKK ESLRLEPDPD NPGRFLVSFT FDATVSGRIS VIFFAKESED CKLTATKEDI LPPITLDFEK
201: GLGQKFKQSS GSGIDFSVFE DVELFKAAAD TEIYPLAVKA EAAPSGGENE EEERSGSKNA QITQAVYEKD KGEIKIRVVK QILWVNGTRY ELQEIYGIGN
301: TVEGDDDSAD DANDPGKECV ICLSEPRDTT VLPCRHMCMC SGCAKVLRFQ TNRCPICRQP VERLLEIKVH GNNGSGNNTG QGETVEQE

Arabidopsis Description

LOG2Probable E3 ubiquitin-protein ligase LOG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S752]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.