Factsheet for Solyc01g080080.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g007640.2.1
Solyc06g082930.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19080.1	Solyc06g007640.2.1	AT5G48385.1	21798944
AT5G19080.1	Solyc06g082930.2.1	AT5G48385.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13950	Canola	cytosol	35.26	55.56
CDY13958	Canola	cytosol	46.15	37.5
HORVU1Hr1G062460.2	Barley	cytosol, nucleus	49.36	37.38
TraesCS1B01G258900.1	Wheat	cytosol	49.36	33.77
GSMUA_Achr3P09070_001	Banana	cytosol	48.72	27.64
KRH51029	Soybean	mitochondrion	57.69	26.79
KRH20904	Soybean	mitochondrion	57.05	23.99
KRH11381	Soybean	mitochondrion	57.05	23.86
VIT_05s0020g02680.t01	Wine grape	mitochondrion	57.69	22.96
Solyc10g084100.1.1	Tomato	nucleus, plastid	46.79	22.88
Solyc10g086080.1.1	Tomato	nucleus	48.72	22.69
CDY24715	Canola	mitochondrion	52.56	22.59
Bra020773.1-P	Field mustard	mitochondrion	52.56	22.59
AT3G06140.1	Thale cress	mitochondrion	51.92	22.56
CDY05235	Canola	mitochondrion	52.56	22.47
KRH02118	Soybean	cytosol, mitochondrion	39.74	22.46
EES19487	Sorghum	nucleus	48.08	22.06
Zm00001d038127_P001	Maize	nucleus	46.79	21.73
Solyc09g007700.2.1	Tomato	plastid	50.0	21.55
Solyc01g098750.2.1	Tomato	plastid	52.56	21.24
Os05t0397650-00	Rice	nucleus	45.51	20.0
AT5G19080.1	Thale cress	cytosol	47.44	19.58
Bra002208.1-P	Field mustard	mitochondrion, nucleus	46.79	19.52
CDX92559	Canola	mitochondrion	46.15	19.35
CDY13949	Canola	mitochondrion	46.79	18.91
Solyc04g054680.1.1	Tomato	cytosol	42.95	18.72
Solyc04g054650.1.1	Tomato	cytosol	41.67	13.37

Protein Annotations

EnsemblPlants:Solyc01g080080.2.1	EnsemblPlantsGene:Solyc01g080080.2	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	PFAM:PF13920	PFscan:PS50089
PIRSF:PIRSF036836	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000276214C	UniProt:K4AXQ3
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:79244454..79245533

Molecular Weight (calculated)

17572.9 Da

IEP (calculated)

4.435

GRAVY (calculated)

-0.310

Length

156 amino acids

Sequence
(BLAST)

001: MDDLSELSSE DSVFPLVITA TTCLPSVLTE DHISDTQPKT SLHMQISQAV LEKDHEGTFK VRIIRQILWV DNVRYELHEI YGIGNSGPDY ENNGSGKECV
101: ICMTEPKDTA VLPCRHMCMC SGCANTLRLQ SNRCPICRQP FEELLEIRIN NGDIDE

Best Arabidopsis Sequence Match ( AT3G06140.1 )
(BLAST)

001: MGISFSNNNR RRDNNNRRHL HHYPPPPPYY YLDPPPPPPP FPPHYDYNYS NYHLSPPLPP QPQINSCSYG HYHYHPQPPQ YFTTAQPNWW GPMMRPAYYC
101: PPQPQTQPPK PYLEQQNAKK VRNDVNVHRD TVRLEVDDLV PGHHLVSFVF DALFDGSFTI TFFAKEEPNC TIIPQFPEVY SPTRFHFQKG PGQKFLQPSG
201: TGTDLSFFVL DDLSKPLEED VYPLVISAET IISPNSISEQ SSVHKQVTQA VLEKDNDGSF KVKVVKQILW IEGVRYELRE LYGSTTQGAA SGLDESGSGT
301: ECVICMTEAK DTAVLPCRHL CMCSDCAKEL RLQSNKCPIC RQPIEELLEI KMNSSDEQH

Arabidopsis Description

LUL4Probable E3 ubiquitin-protein ligase LUL4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LA32]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.