CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX85335
CDX86307
CDX92732
CDX94417
CDY00062
CDY00066
CDY05684
CDY48750
CDY68098
CDY72356

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G19080.1	CDX92732	AT4G25760.1	22291198
AT5G19080.1	CDX94417	AT4G25760.1	22291198
AT5G19080.1	CDY68098	AT4G25760.1	22291198
AT5G19080.1	CDY72356	AT4G25760.1	22291198
AT5G19080.1	CDX85335	AT5G48385.1	21798944
AT5G19080.1	CDX86307	AT5G48385.1	21798944
AT5G19080.1	CDY00062	AT5G48385.1	21798944
AT5G19080.1	CDY00066	AT5G48385.1	21798944
AT5G19080.1	CDY05684	AT5G48385.1	21798944
AT5G19080.1	CDY48750	AT5G48385.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13950	Canola	cytosol	26.08	97.98
Bra002208.1-P	Field mustard	mitochondrion, nucleus	97.85	97.33
CDY13958	Canola	cytosol	48.66	94.27
CDY13949	Canola	mitochondrion	91.67	88.34
AT5G19080.1	Thale cress	cytosol	68.01	66.93
CDY05235	Canola	mitochondrion	60.48	61.64
CDY24715	Canola	mitochondrion	59.14	60.61
TraesCS1B01G258900.1	Wheat	cytosol	34.14	55.7
HORVU1Hr1G062460.2	Barley	cytosol, nucleus	30.65	55.34
CDX70325	Canola	cytosol	14.52	52.43
Zm00001d038127_P001	Maize	nucleus	45.97	50.89
KRH51029	Soybean	mitochondrion	45.97	50.89
EES19487	Sorghum	nucleus	46.24	50.59
KRH20904	Soybean	mitochondrion	50.0	50.13
KRH11381	Soybean	mitochondrion	50.0	49.87
GSMUA_Achr3P09070_001	Banana	cytosol	36.02	48.73
KRH02118	Soybean	cytosol, mitochondrion	35.22	47.46
Os05t0397650-00	Rice	nucleus	44.62	46.76
VIT_05s0020g02680.t01	Wine grape	mitochondrion	48.92	46.43
Solyc01g080080.2.1	Tomato	nucleus	19.35	46.15
PGSC0003DMT400073576	Potato	plastid	47.31	45.71
CDY41587	Canola	cytosol	33.33	45.09
CDY67386	Canola	cytosol	34.95	44.98
CDY13299	Canola	cytosol	34.14	43.2
CDY10400	Canola	cytosol	31.99	39.93
CDY22203	Canola	mitochondrion, plastid	38.44	38.44
CDY41312	Canola	plastid	38.44	38.44
CDY44729	Canola	plastid	39.78	38.05
CDY44348	Canola	cytosol	26.88	38.02
CDY62899	Canola	cytosol	26.34	36.84
CDX70324	Canola	cytosol	16.4	36.31

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078DVW6	EnsemblPlants:CDX92559	ProteinID:CDX92559	ProteinID:CDX92559.1
InterPro:E3ligase_BOI_like	EnsemblPlantsGene:GSBRNA2T00154349001	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13920	PIRSF:PIRSF036836
PFscan:PS50089	PANTHER:PTHR22996	PANTHER:PTHR22996:SF4	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EDD52C
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaA10g15980D

Coordinates

chrLK031872:-:1279156..1281222

Molecular Weight (calculated)

42318.6 Da

IEP (calculated)

5.892

GRAVY (calculated)

-0.676

Length

372 amino acids

Sequence
(BLAST)

001: MGISFSNRRR NNHHRRYHHH LPPPPPYYYS DQPQQPPPQP PHNEYSYTHN HLVSAPQHSL PPPSQPHPPP QVNYGSYGYN YNQNPQQQQP PYFSGYHPNG
101: WNTMMRPVYY GPAVVVDQQP PQPYVEHQSA KKVRNDVNVH KDTVRLEADD LNPGYHLVSF LFDAVFDGSF TIMFFAKEEE NCTIVPHFPE AFKPIQVPFQ
201: KGTAQKFVQP SGTGTDLGFF SLDDLSNPLP DEVYPLVISA ETVISGSEEP LVHKQITLAC LEKTDDGSFK VKVMKQILWI EGARYELREL YGIDNSTAQD
301: DDVASGLEDS GDKECVICLT EPKDTAVMPC RHLCLCSDCA KELRFQSNKC PICRQPIDEL LMIKVETSNE QH

Best Arabidopsis Sequence Match ( AT5G19080.1 )
(BLAST)

001: MGISLSKRRR DNNNNHHHPH HNPPYYYSDP PPQQPPPQNG YSYSHNYPVS TPQLSLPPPP AQPPSSSQPP PSQISYRPYG QNYHQNQYYP QQAPPYFTGY
101: HHNGFNPMMR PVYFGPTPVA VMEPPAPYVE HQTAKKVKND VNVNKATVRL VADDLNPGHY LVSFVFDALF DGSFTIIFFG EEESKCTIVP HLPEAFPPIK
201: VPFQKGAGQK FLQAPGTGID LGFFSLDDLS KPSPEEVYPL VISAETVISP SSVSEEPLVH KQITQAVLEK TNDGSFKVKV MKQILWIEGE RYELQELYGI
301: DNSITQGTAA SGLEDTGGKE CVICLTEPKD TAVMPCRHLC LCSDCAEELR FQTNKCPICR QPIHELVKIK VESSDEQH

Arabidopsis Description

LUL3Probable E3 ubiquitin-protein ligase LUL3 [Source:UniProtKB/Swiss-Prot;Acc:Q84ME1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.