CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81722
CDX90032
CDX96836
CDX97535
CDY15177
CDY33258
CDY34252
CDY36574
CDY38318
CDY39087
CDY46317
CDY53304
CDY65326
CDY66415

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48385.1	CDX90032	AT1G01440.1	21798944
AT5G48385.1	CDY15177	AT1G01440.1	21798944
AT5G48385.1	CDX81722	AT1G15570.1	21798944
AT5G48385.1	CDX96836	AT1G15570.1	21798944
AT5G48385.1	CDY36574	AT1G15570.1	21798944
AT5G48385.1	CDY53304	AT1G15570.1	21798944
AT5G48385.1	CDY66415	AT1G15570.1	21798944
AT5G48385.1	CDX97535	AT3G13990.1	21798944
AT5G48385.1	CDY33258	AT3G13990.1	21798944
AT5G48385.1	CDY39087	AT3G13990.1	21798944
AT5G48385.1	CDY65326	AT3G13990.1	21798944
AT5G48385.1	CDY34252	AT3G22440.1	21798944
AT5G48385.1	CDY38318	AT3G22440.1	21798944
AT5G48385.1	CDY46317	AT3G22440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036176.1-P	Field mustard	cytosol	91.76	94.23
CDY00062	Canola	cytosol, mitochondrion, nucleus, plastid	36.89	92.49
CDY05684	Canola	cytosol	81.46	84.14
CDY48750	Canola	cytosol	81.09	82.16
AT5G48385.1	Thale cress	cytosol	83.33	79.75
KRH66282	Soybean	cytosol	60.49	59.16
PGSC0003DMT400071153	Potato	nucleus	60.3	59.08
KRH66280	Soybean	cytosol	60.11	59.01
KRH07289	Soybean	cytosol	60.3	58.97
Solyc06g082930.2.1	Tomato	nucleus	58.61	58.5
VIT_07s0151g00650.t01	Wine grape	endoplasmic reticulum, extracellular	60.86	57.73
PGSC0003DMT400053214	Potato	cytosol	58.43	57.14
Solyc06g007640.2.1	Tomato	nucleus	56.93	56.72
GSMUA_Achr2P05710_001	Banana	nucleus	19.66	54.12
GSMUA_Achr8P29000_001	Banana	nucleus	53.18	52.59
TraesCS5A01G168100.1	Wheat	cytosol	52.43	51.95
HORVU5Hr1G051330.1	Barley	cytosol	52.43	51.95
Zm00001d019892_P001	Maize	nucleus	39.14	51.6
GSMUA_Achr9P08130_001	Banana	cytosol	52.06	51.48
TraesCS5D01G172300.2	Wheat	cytosol	52.81	50.9
Zm00001d019890_P001	Maize	nucleus	50.75	50.75
EES02294	Sorghum	nucleus	50.94	50.75
TraesCS5B01G164900.2	Wheat	cytosol	52.43	50.54
Zm00001d005107_P001	Maize	cytosol	50.37	50.37
Os09t0248300-01	Rice	cytosol	49.25	48.52
GSMUA_Achr3P16830_001	Banana	endoplasmic reticulum, golgi	53.0	48.13
Os09t0248200-01	Rice	cytosol	48.31	47.34
CDX86307	Canola	nucleus	85.02	30.41
CDY55572	Canola	nucleus	19.1	28.49
CDX69452	Canola	cytosol	23.78	28.16
CDX85335	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	84.83	28.01
CDY12290	Canola	cytosol	23.22	27.87
CDY67951	Canola	cytosol	23.97	27.77
CDY46317	Canola	cytosol, nucleus, plastid	26.03	26.48
CDY34252	Canola	cytosol, nucleus, plastid	25.66	26.25
CDY67200	Canola	cytosol, nucleus	6.74	25.71
CDY19713	Canola	cytosol	13.11	23.03
CDY38318	Canola	nucleus	20.79	20.9
CDX99994	Canola	peroxisome	12.92	20.66
CDY05835	Canola	cytosol, nucleus, plastid	12.92	19.22
CDY38847	Canola	nucleus, plastid	19.48	17.45
CDY32645	Canola	nucleus	18.54	16.98
CDX71688	Canola	nucleus	17.23	15.73
CDX86173	Canola	cytosol	20.22	12.5
CDX80668	Canola	cytosol, mitochondrion, plasma membrane	20.6	12.33
CDX99996	Canola	extracellular	3.37	11.18
CDX99995	Canola	cytosol, nucleus, peroxisome	5.43	6.05
CDY19712	Canola	cytosol, nucleus, peroxisome	5.43	6.05

Protein Annotations

EnsemblPlants:CDY00066	EnsemblPlantsGene:GSBRNA2T00109558001	InterPro:Frigida	ncoils:Coil	PANTHER:PTHR31791	PANTHER:PTHR31791:SF12
PFAM:PF07899	ProteinID:CDY00066	ProteinID:CDY00066.1	SEG:seg	UniParc:UPI0004EE1810	MapMan:35.1

Description

BnaC09g02350D

Coordinates

chrLK031916:-:560607..563492

Molecular Weight (calculated)

59565.1 Da

IEP (calculated)

7.496

GRAVY (calculated)

-0.528

Length

534 amino acids

Sequence
(BLAST)

001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRCAVTLNLK WKELEEHFHG LERSLKRRFH ELEDQEKEYE TKTRKAQELL EKKKAAVEAK EKASLERLQK
101: KRDSAVFAIN SALDKYNNAP IADGSITDGT VQEDAEISPQ VKAYPELLKL CKDMDSTGLH KFVSDNRKNL ASLKEEIPLA FKVAANPATL VLDSLEGFYP
201: IESSPPPSDG KKDTNLLGTR RTCVMLMECL SILLSRLDRS SLAGILSENV KCRAKAIAGG WNPLLEGLDM DACNGNSLEA HAFLQLLASF AVVKDFKEDE
301: LLKLIPMVSR RRQAAELCRS LGLSEKMPGV IEVLLNSGRH IDAVNLAFAF GLAEQFPPVE LLKSYLTEAK RSSSQGRPDN TSPAVQASDE FNERELTGLK
401: AVVKCVEVHN LEEHYPVEPL EKRILELEKA KAEKKKATEP AKPQTKRPRG AQPRVTDNNN NNNKTGYGRV IIPERYPQYV YDNRPFLTGP IMAAQAHPPL
501: PPPQTYTFSP AAAAHGNFYG NCYQYQAPPP PYFP

Best Arabidopsis Sequence Match ( AT5G48385.1 )
(BLAST)

001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH

Arabidopsis Description

FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.