CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81722
CDX90032
CDX96836
CDX97535
CDY15177
CDY33258
CDY34252
CDY36574
CDY38318
CDY39087
CDY46317
CDY53304
CDY65326
CDY66415

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48385.1	CDX90032	AT1G01440.1	21798944
AT5G48385.1	CDY15177	AT1G01440.1	21798944
AT5G48385.1	CDX81722	AT1G15570.1	21798944
AT5G48385.1	CDX96836	AT1G15570.1	21798944
AT5G48385.1	CDY36574	AT1G15570.1	21798944
AT5G48385.1	CDY53304	AT1G15570.1	21798944
AT5G48385.1	CDY66415	AT1G15570.1	21798944
AT5G48385.1	CDX97535	AT3G13990.1	21798944
AT5G48385.1	CDY33258	AT3G13990.1	21798944
AT5G48385.1	CDY39087	AT3G13990.1	21798944
AT5G48385.1	CDY65326	AT3G13990.1	21798944
AT5G48385.1	CDY34252	AT3G22440.1	21798944
AT5G48385.1	CDY38318	AT3G22440.1	21798944
AT5G48385.1	CDY46317	AT3G22440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020704.1-P	Field mustard	cytosol	94.88	96.34
CDY05684	Canola	cytosol	93.36	95.16
CDY00062	Canola	cytosol, mitochondrion, nucleus, plastid	34.35	84.98
CDY00066	Canola	cytosol	82.16	81.09
AT5G48385.1	Thale cress	cytosol	83.68	79.03
KRH66282	Soybean	cytosol	63.19	60.99
KRH07289	Soybean	cytosol	62.81	60.62
KRH66280	Soybean	cytosol	62.43	60.48
PGSC0003DMT400071153	Potato	nucleus	61.29	59.27
PGSC0003DMT400053214	Potato	cytosol	60.72	58.61
Solyc06g082930.2.1	Tomato	nucleus	59.39	58.5
VIT_07s0151g00650.t01	Wine grape	endoplasmic reticulum, extracellular	62.43	58.44
Solyc06g007640.2.1	Tomato	nucleus	59.2	58.21
GSMUA_Achr8P29000_001	Banana	nucleus	54.84	53.52
GSMUA_Achr2P05710_001	Banana	nucleus	19.54	53.09
TraesCS5A01G168100.1	Wheat	cytosol	54.08	52.88
HORVU5Hr1G051330.1	Barley	cytosol	53.89	52.69
GSMUA_Achr9P08130_001	Banana	cytosol	53.51	52.22
Zm00001d019892_P001	Maize	nucleus	39.85	51.85
TraesCS5D01G172300.2	Wheat	cytosol	54.27	51.62
EES02294	Sorghum	nucleus	52.18	51.31
TraesCS5B01G164900.2	Wheat	cytosol	53.89	51.26
Zm00001d019890_P001	Maize	nucleus	51.8	51.12
Zm00001d005107_P001	Maize	cytosol	51.23	50.56
Os09t0248300-01	Rice	cytosol	50.66	49.26
Os09t0248200-01	Rice	cytosol	50.09	48.44
GSMUA_Achr3P16830_001	Banana	endoplasmic reticulum, golgi	53.89	48.3
CDX86307	Canola	nucleus	88.05	31.08
CDY55572	Canola	nucleus	19.73	29.05
CDX85335	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	87.67	28.57
CDY46317	Canola	cytosol, nucleus, plastid	27.51	27.62
CDY34252	Canola	cytosol, nucleus, plastid	26.95	27.2
CDX69452	Canola	cytosol	23.15	27.05
CDY67951	Canola	cytosol	23.15	26.46
CDY12290	Canola	cytosol	22.2	26.29
CDY19713	Canola	cytosol	13.85	24.01
CDY67200	Canola	cytosol, nucleus	6.26	23.57
CDY38318	Canola	nucleus	22.39	22.22
CDX99994	Canola	peroxisome	13.66	21.56
CDY05835	Canola	cytosol, nucleus, plastid	13.66	20.06
CDY38847	Canola	nucleus, plastid	19.54	17.28
CDY32645	Canola	nucleus	18.79	16.98
CDX71688	Canola	nucleus	17.84	16.07
CDX86173	Canola	cytosol	20.68	12.62
CDX80668	Canola	cytosol, mitochondrion, plasma membrane	20.87	12.33
CDX99996	Canola	extracellular	3.23	10.56
CDX99995	Canola	cytosol, nucleus, peroxisome	5.5	6.05
CDY19712	Canola	cytosol, nucleus, peroxisome	5.5	6.05

Protein Annotations

EnsemblPlants:CDY48750	EnsemblPlantsGene:GSBRNA2T00091656001	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil	PANTHER:PTHR31791
PANTHER:PTHR31791:SF12	PFAM:PF07899	ProteinID:CDY48750	ProteinID:CDY48750.1	SEG:seg	UniParc:UPI0004EF03ED
UniProt:A0A078ICW0	MapMan:35.1	:	:	:	:

Description

BnaA02g30110DFRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICW0]

Coordinates

chrLK032789:+:89451..94229

Molecular Weight (calculated)

58779.0 Da

IEP (calculated)

5.605

GRAVY (calculated)

-0.472

Length

527 amino acids

Sequence
(BLAST)

001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QCAVTFNLKW NELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KASLERLQKK
101: RDAAVFAINT ALDKYNNNNA PNISAKAFAA EDENLDGTVQ DAEISPVKAY PELVKLCEDM DSAGLHKFVS DNRKNLALLK EEIPVALKAA ANPASLVLDS
201: LEGFYPTTTD GKKDANLLGM RRTCIMLMEC LSVLLSGLDS NSLVAVLSED VKDRAKGVAE GWSPLLETID MDAGNGNSLE AHAFLQLLAT FGIVSEFEED
301: GILKLIPMVS RRRQAAELCR SLGLSEKMPG VIEVLVDSGK QIDAVNLAFA FGLTEKFPPV ELLKCYLTET SRSSSQGNAS PAVQAIICVP MQDDFNEREL
401: TGLKAVIKCV EEHNLEEQYP VEPLHKRILQ LEKTKAEKKR ATEPTKPQTK RPRGPQPRVT DNNNKTGYGR VIPERYPQYL YDNRQFLSGP IMAAQAPPPQ
501: TYTFSPAAAH GNFYGNCYQY QAPPYFH

Best Arabidopsis Sequence Match ( AT5G48385.1 )
(BLAST)

001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH

Arabidopsis Description

FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.