Factsheet for Solyc06g082930.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096000.2.1
Solyc03g120440.1.1
Solyc05g052510.2.1
Solyc06g051310.2.1
Solyc09g076050.2.1
Solyc12g049230.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48385.1	Solyc03g120440.1.1	AT1G15570.1	21798944
AT5G48385.1	Solyc03g096000.2.1	AT3G08530.1	21798944
AT5G48385.1	Solyc05g052510.2.1	AT3G08530.1	21798944
AT5G48385.1	Solyc06g051310.2.1	AT3G08530.1	21798944
AT5G48385.1	Solyc12g049230.1.1	AT3G13990.1	21798944
AT5G48385.1	Solyc09g076050.2.1	AT3G22440.1	21798944
AT5G48385.1	Solyc09g076050.2.1	AT4G14900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071153	Potato	nucleus	96.07	94.31
Solyc06g007640.2.1	Tomato	nucleus	75.33	75.19
KRH66282	Soybean	cytosol	66.17	64.84
VIT_07s0151g00650.t01	Wine grape	endoplasmic reticulum, extracellular	68.22	64.83
KRH07289	Soybean	cytosol	65.61	64.29
KRH66280	Soybean	cytosol	65.23	64.15
CDY05684	Canola	cytosol	58.13	60.15
Bra020704.1-P	Field mustard	cytosol	57.94	59.73
Bra036176.1-P	Field mustard	cytosol	57.76	59.42
CDY48750	Canola	cytosol	58.5	59.39
CDY00066	Canola	cytosol	58.5	58.61
Bra037489.1-P	Field mustard	cytosol	59.81	58.5
CDY00062	Canola	cytosol, mitochondrion, nucleus, plastid	23.18	58.22
GSMUA_Achr2P05710_001	Banana	nucleus	20.56	56.7
AT5G48385.1	Thale cress	cytosol	59.07	56.63
GSMUA_Achr8P29000_001	Banana	nucleus	53.83	53.33
HORVU5Hr1G051330.1	Barley	cytosol	53.46	53.06
GSMUA_Achr9P08130_001	Banana	cytosol	53.27	52.78
Zm00001d005107_P001	Maize	cytosol	52.52	52.62
TraesCS5A01G168100.1	Wheat	cytosol	52.9	52.5
EES02294	Sorghum	nucleus	52.52	52.43
Zm00001d019892_P001	Maize	nucleus	39.44	52.1
Zm00001d019890_P001	Maize	nucleus	51.78	51.87
Os09t0248300-01	Rice	cytosol	52.52	51.84
TraesCS5D01G172300.2	Wheat	cytosol	53.64	51.81
TraesCS5B01G164900.2	Wheat	cytosol	53.27	51.44
Os09t0248200-01	Rice	cytosol	51.59	50.64
GSMUA_Achr3P16830_001	Banana	endoplasmic reticulum, golgi	54.21	49.32
Solyc04g008840.2.1	Tomato	nucleus	35.33	31.4
Solyc09g076050.2.1	Tomato	nucleus	26.54	27.63
Solyc11g071340.1.1	Tomato	nucleus	22.06	24.63
CDX86307	Canola	nucleus	59.63	21.37
CDX85335	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	60.19	19.91
Solyc03g117910.2.1	Tomato	plastid	12.15	18.84
Solyc12g042440.1.1	Tomato	nucleus, plastid	17.94	17.55
Solyc03g117930.2.1	Tomato	nucleus	17.57	15.99
Solyc06g074450.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	15.7	14.69
Solyc04g072200.1.1	Tomato	cytosol	17.57	13.07
Solyc03g117920.1.1	Tomato	nucleus	7.85	11.76
Bra037488.1-P	Field mustard	cytosol	0.19	0.11

Protein Annotations

EnsemblPlants:Solyc06g082930.2.1	EnsemblPlantsGene:Solyc06g082930.2	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil	PANTHER:PTHR31791
PANTHER:PTHR31791:SF12	PFAM:PF07899	SEG:seg	UniParc:UPI0002765BD6	UniProt:K4CAE8	MapMan:35.1

Description

FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:K4CAE8]

Coordinates

chr6:+:48556738..48560138

Molecular Weight (calculated)

59953.8 Da

IEP (calculated)

6.085

GRAVY (calculated)

-0.537

Length

535 amino acids

Sequence
(BLAST)

001: MDSTTSKIQQ LQKAFAELES HRAVTLNLQW KQLEEHFNGL QKSLKRRFTE LEDQEKEFET KIVQSTEILE KRQAAVIAKE QSSLQRLQEK RDAAVSAISI
101: ALEKHRSPCS VEPTVINCEV EDEPSVLEEK PDNLTEIGLV TGDTWKSFQD SVVEVKSYPE LVNLCRNMDS EGLHKFISDN RKNLAALREE IPLALRASTN
201: PASLVLDSLH GFYNSDMSIS DAKKDANLLG LRRTCIMLLE CLSTLLNTLD TDSISSIISE NTRGRAKAIA EEWNPKLDEL DVDANNGNSL EAHAFLQLLA
301: TFSISSNFNQ ENLSKLIPMV SRRRQTADLC RSLGLSDRMP GVIDVLINNG RHIDAVNLAF AFELTEQFPP VSLLKSYLNE ASKASTPSNS GNASPTVQND
401: VNEKELSALK AVLKCIEDHK LEEQYLVDPL QKRVHQLEKA KSDKKKATEV TKPQSKRPRP NGVGNGPRVN NVVTEKNFYP RMTDRYPQPV YDGPYAYPGP
501: TNTHVPSFIG APAYNFSPGH DFFGNGYHYQ APYLH

Best Arabidopsis Sequence Match ( AT5G48385.1 )
(BLAST)

001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH

Arabidopsis Description

FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.