Factsheet for Solyc03g120440.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008370.2.1
Solyc03g113740.2.1
Solyc05g053660.1.1
Solyc06g011280.2.1
Solyc06g061020.2.1
Solyc08g007120.2.1
Solyc08g066330.1.1
Solyc08g077460.2.1
Solyc08g078700.2.1
Solyc08g081830.2.1
Solyc09g091780.2.1	nucleus
Solyc10g005280.1.1
Solyc10g074720.1.1
Solyc11g028090.1.1
Solyc11g028100.1.1
Solyc12g098310.1.1	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15570.1	Solyc06g011280.2.1	AT1G57720.1	20706207
AT1G15570.1	Solyc11g028090.1.1	AT1G57720.1	20706207
AT1G15570.1	Solyc11g028100.1.1	AT1G57720.1	20706207
AT1G15570.1	Solyc10g005280.1.1	AT1G61870.1	20706207
AT1G15570.1	Solyc08g081830.2.1	AT1G64180.1	21798944
AT1G15570.1	Solyc01g008370.2.1	AT3G11270.1	20706207
AT1G15570.1	Solyc05g053660.1.1	AT3G24140.1	21798944
AT1G15570.1	Solyc03g113740.2.1	AT3G48150.1	21798944
AT1G15570.1	Solyc08g066330.1.1	AT3G48750.1	16415207
AT1G15570.1	Solyc10g074720.1.1	AT3G54180.1	20706207
AT1G15570.1	Solyc06g061020.2.1	AT4G17680.1	21798944
AT1G15570.1	Solyc08g007120.2.1	AT4G17680.1	21798944
AT1G15570.1	Solyc08g077460.2.1	AT4G17680.1	21798944
AT1G15570.1	Solyc08g078700.2.1	AT4G25200.1	21798944
AT1G80370.1	Solyc09g091780.2.1	AT2G32710.1	20018602
AT1G80370.1	Solyc12g098310.1.1	AT2G32710.1	20018602

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006576	Potato	nucleus	94.54	93.52
GSMUA_Achr1P14000_001	Banana	nucleus, plasma membrane, plastid	34.93	64.78
Bra000822.1-P	Field mustard	nucleus	46.29	56.23
Bra031463.1-P	Field mustard	nucleus	44.98	55.83
CDY61993	Canola	nucleus	45.63	55.44
CDY48212	Canola	nucleus	45.63	55.44
Bra026756.1-P	Field mustard	plastid	47.38	53.06
CDY53304	Canola	plastid	47.16	52.81
VIT_09s0002g05240.t01	Wine grape	nucleus	56.11	52.45
CDX81722	Canola	nucleus, plastid	45.63	51.86
CDY66415	Canola	nucleus	48.03	50.69
AT1G80370.1	Thale cress	plastid	50.66	50.33
CDY36574	Canola	mitochondrion, nucleus	47.82	50.23
CDX79389	Canola	plastid	46.94	49.65
KRH47513	Soybean	nucleus	51.53	49.58
CDX96836	Canola	nucleus, plastid	47.38	49.32
Bra003563.1-P	Field mustard	plastid	46.29	49.07
CDX67944	Canola	plastid	46.07	48.84
CDY38664	Canola	nucleus, plastid	48.47	48.79
CDY39984	Canola	plastid	47.6	48.66
CDY37592	Canola	mitochondrion, plastid	48.47	48.58
Bra016654.1-P	Field mustard	nucleus, plastid	47.16	48.54
Bra008477.1-P	Field mustard	plastid	48.25	48.36
AT1G15570.1	Thale cress	nucleus, plastid	47.38	48.22
Bra026120.1-P	Field mustard	nucleus	48.03	47.21
CDX87305	Canola	plastid	46.94	46.54
Solyc06g065680.2.1	Tomato	nucleus, plastid	48.25	46.53
KRH44391	Soybean	nucleus	47.82	46.5
Bra035186.1-P	Field mustard	plastid	46.51	46.1
OQU77084	Sorghum	nucleus	47.82	44.88
KXG23504	Sorghum	mitochondrion, nucleus	46.51	44.1
Os12t0502300-01	Rice	nucleus, plastid	46.94	43.88
GSMUA_Achr3P25340_001	Banana	nucleus	50.87	42.99
Solyc04g078310.2.1	Tomato	nucleus	34.5	42.59
TraesCS5A01G108500.2	Wheat	plastid	46.94	42.32
TraesCS3D01G529100.1	Wheat	plastid	46.29	41.98
TraesCSU01G054300.1	Wheat	nucleus	45.85	41.92
TraesCS5B01G114300.2	Wheat	plastid	46.29	41.81
TraesCS5D01G121100.2	Wheat	plastid	46.29	41.73
Solyc12g088520.1.1	Tomato	nucleus	32.31	41.69
Zm00001d023732_P002	Maize	mitochondrion, nucleus, plastid	44.1	41.65
Solyc12g088530.1.1	Tomato	nucleus	32.1	41.53
Solyc12g088500.1.1	Tomato	nucleus	31.88	41.24
TraesCS3A01G523600.1	Wheat	plastid	45.63	41.22
HORVU3Hr1G114440.21	Barley	nucleus, plastid	45.41	41.03
Zm00001d014756_P006	Maize	nucleus, plastid	46.51	40.88
Solyc12g088470.1.1	Tomato	nucleus	31.88	40.56
Solyc10g049360.1.1	Tomato	nucleus	31.88	38.62
Solyc11g005090.1.1	Tomato	plastid	35.59	33.27
Solyc02g061650.1.1	Tomato	nucleus	22.71	29.63
Solyc12g094600.1.1	Tomato	nucleus	25.98	28.0
Solyc04g082430.2.1	Tomato	nucleus	23.8	27.74
Solyc02g082820.2.1	Tomato	nucleus	26.2	27.65
Solyc03g032190.2.1	Tomato	nucleus	25.33	26.91
Solyc10g078330.1.1	Tomato	nucleus	23.58	25.53
Solyc06g073610.2.1	Tomato	nucleus	24.02	25.0
Solyc01g009040.2.1	Tomato	nucleus	23.58	24.83
Solyc10g080950.1.1	Tomato	nucleus	23.14	22.94
Solyc07g066660.2.1	Tomato	nucleus	21.83	13.53

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	UniProt:K4BMJ3	PFAM:PF00134
PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177	PANTHER:PTHR10177:SF239	SMART:SM00385	SMART:SM01332
SUPFAM:SSF47954	EnsemblPlantsGene:Solyc03g120440.1	EnsemblPlants:Solyc03g120440.1.1	UniParc:UPI0002766D5E	:	:

Description

No Description!

Coordinates

chr3:-:68826955..68831532

Molecular Weight (calculated)

51871.8 Da

IEP (calculated)

9.376

GRAVY (calculated)

-0.222

Length

458 amino acids

Sequence
(BLAST)

001: MKRENSVISA AIEPMVRVTR SRAAVSEKSM VASTGELPKQ RGQKRALQIS SDPAILRVRN KNVPLTSCVE QKCRPVLKDV TNLCCNTSNG DAVKVPKKKK
101: IMRVGNSSMN VSTTSVDPEV SQFPAKLPPR SSLNQSCSDR KSHEQQGNAV EIKGFPRKSI VRKAVPDAAL STSTKLDFID IDSDKKDPLQ CSQYAHDIYN
201: NLRVAELIRW PLSNFMETLQ RDITESMRAI LVDWIVEVSE EYNLVPDTLY LAVHFIDLFL SKNYVERKNL QLLGITCMLV ASKYEEMCGP RVEEFCFITD
301: NAYTKNEVLA MEILVLNFLG FRLSTPTAKT FLRRFIRAAQ ASYKNPNLEL EFLANYLTEL TLLEYGFLKF TPSAIAASSV FLARWTLDQS SHPWSPTLEH
401: YTYYKAQHLK TTVIALQGLQ LNINNCLLNV IRAKYRQEKF KSVACLSSPK LLETLFQT

Best Arabidopsis Sequence Match ( AT1G80370.1 )
(BLAST)

001: MGKENAVSGN SIPIHGRPVT RALASALRAS SKLITSSEVA ATTQNQGRVL RAKSKRTALD EKKANAPKKR AVLKDITNVT CENSYTSCFS VAVENIKQIK
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S

Arabidopsis Description

CYCA2-4Cyclin-A2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C968]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.