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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • cytosol 5
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
extracellular: 22364583
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 22364583 doi
P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez
Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400040683 Potato cytosol 95.4 95.4
Solyc11g028100.1.1 Tomato cytosol, unclear 88.14 87.92
Os02t0220500-01 Rice plasma membrane 76.76 76.57
VIT_18s0041g01900.t01 Wine grape cytosol 77.72 75.71
Os02t0220600-02 Rice extracellular, plasma membrane 75.79 74.88
KRH01866 Soybean nucleus 75.79 74.52
GSMUA_Achr9P11470_001 Banana cytosol 69.25 74.48
EES04758 Sorghum plastid 75.06 74.16
GSMUA_Achr9P25030_001 Banana cytosol 65.62 74.04
KRH06050 Soybean endoplasmic reticulum 74.82 73.75
KRH51299 Soybean cytosol, endoplasmic reticulum, nucleus 74.82 73.57
VIT_12s0035g01130.t01 Wine grape cytosol 77.0 73.44
AT1G09640.1 Thale cress cytosol 73.37 73.19
KRH26289 Soybean nucleus 73.85 72.97
EER89969 Sorghum cytosol 73.37 72.66
Zm00001d046352_P001 Maize plasma membrane 73.12 72.42
Bra031676.1-P Field mustard cytosol 72.4 72.4
Zm00001d036959_P003 Maize cytosol 72.88 72.18
Zm00001d016358_P006 Maize cytosol 74.09 72.17
Bra020005.1-P Field mustard cytosol 71.91 71.91
Os06t0571400-01 Rice plasma membrane 72.4 71.88
AT1G57720.1 Thale cress cytosol 70.94 70.94
Zm00001d053576_P001 Maize endoplasmic reticulum 74.58 70.48
TraesCS7B01G266300.1 Wheat cytosol, golgi, plastid, unclear 69.01 69.51
TraesCS7D01G360200.2 Wheat nucleus, plastid 68.77 68.77
HORVU7Hr1G087050.1 Barley cytosol 68.77 68.77
TraesCS7A01G362900.1 Wheat golgi 68.04 68.04
TraesCS6A01G186000.1 Wheat cytosol 68.77 67.14
TraesCS6B01G215000.1 Wheat cytosol 68.77 67.14
GSMUA_Achr9P19970_001 Banana cytosol, mitochondrion 14.04 52.73
Bra030790.1-P Field mustard cytosol 69.01 50.35
Solyc11g028090.1.1 Tomato extracellular, plastid 23.73 48.51
GSMUA_Achr2P13820_001 Banana cytosol, endoplasmic reticulum, peroxisome, plastid 42.13 46.4
CDY04368 Canola cytosol 23.73 37.26
Protein Annotations
Gene3D:1.20.1050.10MapMan:17.5.1.2.2Gene3D:3.30.70.1010Gene3D:3.40.30.10InterPro:EF1B_G_CInterPro:EF1B_G_C_sf
GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003746GO:GO:0003824GO:GO:0004364
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005737GO:GO:0006412GO:GO:0006414GO:GO:0006749GO:GO:0008135GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016740GO:GO:0019538InterPro:GST_C
InterPro:Glutathione-S-Trfase_C-likeInterPro:Glutathione-S-Trfase_C_sfInterPro:Glutathione_S-Trfase_NInterPro:IPR001662InterPro:IPR004045InterPro:IPR010987
InterPro:IPR036433UniProt:K4C455PFAM:PF00043PFAM:PF00647PFAM:PF02798PFscan:PS50040
PFscan:PS50404PFscan:PS50405PANTHER:PTHR44372PANTHER:PTHR44372:SF2SMART:SM01183SUPFAM:SSF47616
SUPFAM:SSF52833SUPFAM:SSF89942EnsemblPlantsGene:Solyc06g011280.2EnsemblPlants:Solyc06g011280.2.1InterPro:Thioredoxin-like_sfUniParc:UPI0002767268
SEG:seg:::::
Description
No Description!
Coordinates
chr6:-:6257892..6260968
Molecular Weight (calculated)
47054.5 Da
IEP (calculated)
5.596
GRAVY (calculated)
-0.341
Length
413 amino acids
Sequence
(BLAST)
001: MALILHSTDN NKNASKALIA AEYTGVKVDL AKDFQMGVSN KTPEFLEMNP IGKVPVLQTP DGPVFESNAI ARYVTKTKPN NPLFGSSLIE YAQIEQWNDF
101: SATEIDANIA RWLYPRLGYA VYISQAEEGA VAALKRALGA LNTHLASNTY LVGHFITLAD IIMVCNLSIG FRMILTKSFT KEFPHVERYF WTVVNQPNFV
201: KILGEVKQAE SIPAVQSKPA QPEKLKAKEE PKKEVKKEEP SPVEEEAAPK PKAKNPLDLL PPSKMILDDW KRLYSNTKTN FREVAVKGFW DMYDPEGYSL
301: WFCDYKYNDE NTVSFVTLNK VGGFLQRMEL VRKYAFGKML IVGSEAPFKV QGLWLFRGKE IPKFVMEEVY DMELYEWKEV DINDEAQKER VSQMIEDHEP
401: FEGQALLDAK CFK
Best Arabidopsis Sequence Match ( AT1G09640.1 )
(BLAST)
001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK
Arabidopsis Description
Probable elongation factor 1-gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:O04487]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.