Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- cytosol 5
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
22364583
plastid: 26371478 unclear: 26455813 nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400040683 | Potato | cytosol | 95.4 | 95.4 |
Solyc11g028100.1.1 | Tomato | cytosol, unclear | 88.14 | 87.92 |
Os02t0220500-01 | Rice | plasma membrane | 76.76 | 76.57 |
VIT_18s0041g01900.t01 | Wine grape | cytosol | 77.72 | 75.71 |
Os02t0220600-02 | Rice | extracellular, plasma membrane | 75.79 | 74.88 |
KRH01866 | Soybean | nucleus | 75.79 | 74.52 |
GSMUA_Achr9P11470_001 | Banana | cytosol | 69.25 | 74.48 |
EES04758 | Sorghum | plastid | 75.06 | 74.16 |
GSMUA_Achr9P25030_001 | Banana | cytosol | 65.62 | 74.04 |
KRH06050 | Soybean | endoplasmic reticulum | 74.82 | 73.75 |
KRH51299 | Soybean | cytosol, endoplasmic reticulum, nucleus | 74.82 | 73.57 |
VIT_12s0035g01130.t01 | Wine grape | cytosol | 77.0 | 73.44 |
AT1G09640.1 | Thale cress | cytosol | 73.37 | 73.19 |
KRH26289 | Soybean | nucleus | 73.85 | 72.97 |
EER89969 | Sorghum | cytosol | 73.37 | 72.66 |
Zm00001d046352_P001 | Maize | plasma membrane | 73.12 | 72.42 |
Bra031676.1-P | Field mustard | cytosol | 72.4 | 72.4 |
Zm00001d036959_P003 | Maize | cytosol | 72.88 | 72.18 |
Zm00001d016358_P006 | Maize | cytosol | 74.09 | 72.17 |
Bra020005.1-P | Field mustard | cytosol | 71.91 | 71.91 |
Os06t0571400-01 | Rice | plasma membrane | 72.4 | 71.88 |
AT1G57720.1 | Thale cress | cytosol | 70.94 | 70.94 |
Zm00001d053576_P001 | Maize | endoplasmic reticulum | 74.58 | 70.48 |
TraesCS7B01G266300.1 | Wheat | cytosol, golgi, plastid, unclear | 69.01 | 69.51 |
TraesCS7D01G360200.2 | Wheat | nucleus, plastid | 68.77 | 68.77 |
HORVU7Hr1G087050.1 | Barley | cytosol | 68.77 | 68.77 |
TraesCS7A01G362900.1 | Wheat | golgi | 68.04 | 68.04 |
TraesCS6A01G186000.1 | Wheat | cytosol | 68.77 | 67.14 |
TraesCS6B01G215000.1 | Wheat | cytosol | 68.77 | 67.14 |
GSMUA_Achr9P19970_001 | Banana | cytosol, mitochondrion | 14.04 | 52.73 |
Bra030790.1-P | Field mustard | cytosol | 69.01 | 50.35 |
Solyc11g028090.1.1 | Tomato | extracellular, plastid | 23.73 | 48.51 |
GSMUA_Achr2P13820_001 | Banana | cytosol, endoplasmic reticulum, peroxisome, plastid | 42.13 | 46.4 |
CDY04368 | Canola | cytosol | 23.73 | 37.26 |
Protein Annotations
Gene3D:1.20.1050.10 | MapMan:17.5.1.2.2 | Gene3D:3.30.70.1010 | Gene3D:3.40.30.10 | InterPro:EF1B_G_C | InterPro:EF1B_G_C_sf |
GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003746 | GO:GO:0003824 | GO:GO:0004364 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0005737 | GO:GO:0006412 | GO:GO:0006414 | GO:GO:0006749 | GO:GO:0008135 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019538 | InterPro:GST_C |
InterPro:Glutathione-S-Trfase_C-like | InterPro:Glutathione-S-Trfase_C_sf | InterPro:Glutathione_S-Trfase_N | InterPro:IPR001662 | InterPro:IPR004045 | InterPro:IPR010987 |
InterPro:IPR036433 | UniProt:K4C455 | PFAM:PF00043 | PFAM:PF00647 | PFAM:PF02798 | PFscan:PS50040 |
PFscan:PS50404 | PFscan:PS50405 | PANTHER:PTHR44372 | PANTHER:PTHR44372:SF2 | SMART:SM01183 | SUPFAM:SSF47616 |
SUPFAM:SSF52833 | SUPFAM:SSF89942 | EnsemblPlantsGene:Solyc06g011280.2 | EnsemblPlants:Solyc06g011280.2.1 | InterPro:Thioredoxin-like_sf | UniParc:UPI0002767268 |
SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6:-:6257892..6260968
Molecular Weight (calculated)
47054.5 Da
IEP (calculated)
5.596
GRAVY (calculated)
-0.341
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MALILHSTDN NKNASKALIA AEYTGVKVDL AKDFQMGVSN KTPEFLEMNP IGKVPVLQTP DGPVFESNAI ARYVTKTKPN NPLFGSSLIE YAQIEQWNDF
101: SATEIDANIA RWLYPRLGYA VYISQAEEGA VAALKRALGA LNTHLASNTY LVGHFITLAD IIMVCNLSIG FRMILTKSFT KEFPHVERYF WTVVNQPNFV
201: KILGEVKQAE SIPAVQSKPA QPEKLKAKEE PKKEVKKEEP SPVEEEAAPK PKAKNPLDLL PPSKMILDDW KRLYSNTKTN FREVAVKGFW DMYDPEGYSL
301: WFCDYKYNDE NTVSFVTLNK VGGFLQRMEL VRKYAFGKML IVGSEAPFKV QGLWLFRGKE IPKFVMEEVY DMELYEWKEV DINDEAQKER VSQMIEDHEP
401: FEGQALLDAK CFK
101: SATEIDANIA RWLYPRLGYA VYISQAEEGA VAALKRALGA LNTHLASNTY LVGHFITLAD IIMVCNLSIG FRMILTKSFT KEFPHVERYF WTVVNQPNFV
201: KILGEVKQAE SIPAVQSKPA QPEKLKAKEE PKKEVKKEEP SPVEEEAAPK PKAKNPLDLL PPSKMILDDW KRLYSNTKTN FREVAVKGFW DMYDPEGYSL
301: WFCDYKYNDE NTVSFVTLNK VGGFLQRMEL VRKYAFGKML IVGSEAPFKV QGLWLFRGKE IPKFVMEEVY DMELYEWKEV DINDEAQKER VSQMIEDHEP
401: FEGQALLDAK CFK
001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK
Arabidopsis Description
Probable elongation factor 1-gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:O04487]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.