Factsheet for Bra020005.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93494	Canola	cytosol	99.27	99.27
AT1G09640.1	Thale cress	cytosol	87.65	87.44
Bra031676.1-P	Field mustard	cytosol	87.41	87.41
GSMUA_Achr8P15790_001	Banana	cytosol	9.2	86.36
Os02t0220500-01	Rice	plasma membrane	76.27	76.09
Os02t0220600-02	Rice	extracellular, plasma membrane	76.51	75.6
EES04758	Sorghum	plastid	75.79	74.88
GSMUA_Achr9P25030_001	Banana	cytosol	66.34	74.86
KRH01866	Soybean	nucleus	76.03	74.76
GSMUA_Achr9P11470_001	Banana	cytosol	69.01	74.22
Solyc11g028100.1.1	Tomato	cytosol, unclear	73.85	73.67
VIT_18s0041g01900.t01	Wine grape	cytosol	75.54	73.58
EER89969	Sorghum	cytosol	74.09	73.38
KRH51299	Soybean	cytosol, endoplasmic reticulum, nucleus	74.58	73.33
Zm00001d046352_P001	Maize	plasma membrane	73.85	73.14
Os06t0571400-01	Rice	plasma membrane	73.61	73.08
Zm00001d016358_P006	Maize	cytosol	74.58	72.64
GSMUA_Achr9P19980_001	Banana	cytosol	7.02	72.5
Zm00001d036959_P003	Maize	cytosol	72.88	72.18
PGSC0003DMT400040683	Potato	cytosol	72.16	72.16
PGSC0003DMT400065617	Potato	cytosol	72.16	71.98
Solyc06g011280.2.1	Tomato	extracellular	71.91	71.91
KRH06050	Soybean	endoplasmic reticulum	72.88	71.84
VIT_12s0035g01130.t01	Wine grape	cytosol	75.3	71.82
KRH26289	Soybean	nucleus	72.64	71.77
Zm00001d053576_P001	Maize	endoplasmic reticulum	74.33	70.25
TraesCS7B01G266300.1	Wheat	cytosol, golgi, plastid, unclear	68.77	69.27
TraesCS7A01G362900.1	Wheat	golgi	69.01	69.01
TraesCS7D01G360200.2	Wheat	nucleus, plastid	69.01	69.01
HORVU7Hr1G087050.1	Barley	cytosol	68.04	68.04
TraesCS6B01G215000.1	Wheat	cytosol	69.25	67.61
TraesCS6A01G186000.1	Wheat	cytosol	68.52	66.9
Bra030790.1-P	Field mustard	cytosol	86.44	63.07
GSMUA_Achr9P19970_001	Banana	cytosol, mitochondrion	14.53	54.55
HORVU6Hr1G039770.1	Barley	cytosol	13.32	53.92
Solyc11g028090.1.1	Tomato	extracellular, plastid	24.21	49.51
GSMUA_Achr2P13820_001	Banana	cytosol, endoplasmic reticulum, peroxisome, plastid	42.86	47.2
VIT_12s0035g01120.t01	Wine grape	plastid	47.94	43.61
GSMUA_Achr8P15800_001	Banana	extracellular	5.81	35.29

Protein Annotations

Gene3D:1.20.1050.10	MapMan:17.5.1.2.2	Gene3D:3.30.70.1010	Gene3D:3.40.30.10	EnsemblPlantsGene:Bra020005	EnsemblPlants:Bra020005.1
EnsemblPlants:Bra020005.1-P	InterPro:EF1B_G_C	InterPro:EF1B_G_C_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0005488	GO:GO:0005515	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:GST_C
InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR001662	InterPro:IPR004045	InterPro:IPR010987
InterPro:IPR036433	UniProt:M4DU12	PFAM:PF00043	PFAM:PF00647	PFAM:PF02798	PFscan:PS50040
PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR44372	PANTHER:PTHR44372:SF2	SMART:SM01183	SUPFAM:SSF47616
SUPFAM:SSF52833	SUPFAM:SSF89942	InterPro:Thioredoxin-like_sf	UniParc:UPI000253E8C2	SEG:seg	:

Description

AT1G09640 (E=4e-193) | elongation factor 1B-gamma, putative / eEF-1B gamma, putative

Coordinates

chrA06:+:3308873..3311090

Molecular Weight (calculated)

46399.8 Da

IEP (calculated)

5.414

GRAVY (calculated)

-0.266

Length

413 amino acids

Sequence
(BLAST)

001: MALVLHTYKG NKGAEKALIA AEYTGVKIDV PDFEMGVANK TPEFLKMNPI GKVPVLETPE GPIFESNAIA RYVSRLNGEN SLNGSSLIEY AQIEQWIDFS
101: SLEIFGSIFM WFGARIGYKP YSVPGEEAAI SALKRALDAL NTHLASKTFL VGHSITLADI ITVCNLSLGY TTVMTKSFTS AFPHVERYFW TVINQPNFKK
201: VVGEVKQTEA VPPVASKKPA QPAKAKEEPK KKAAPAAEAP KPVEEEEAPK PKAKNPLDLL PPTPMVLDEW KRLYSNTKSN FREVAIKGFW DMYDPEGYSL
301: WFCDYKYNDE NMVSFVTLNK VGGFLQRMDL ARKYAFGKML ICGSEGPFKV KGLWLFRGPE IPKFVMDEVY DMELYEWTKV DISDEAQKER VSQMIEDAEP
401: FEGEALLDAK CFK

Best Arabidopsis Sequence Match ( AT1G09640.1 )
(BLAST)

001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK

Arabidopsis Description

Probable elongation factor 1-gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:O04487]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.