Factsheet for Zm00001d036959_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89969	Sorghum	cytosol	95.68	95.68
Zm00001d046352_P001	Maize	plasma membrane	94.96	94.96
Os06t0571400-01	Rice	plasma membrane	85.13	85.34
GSMUA_Achr9P11470_001	Banana	cytosol	72.9	79.17
TraesCS7B01G266300.1	Wheat	cytosol, golgi, plastid, unclear	77.7	79.02
Zm00001d016358_P006	Maize	cytosol	80.34	79.01
GSMUA_Achr9P25030_001	Banana	cytosol	69.06	78.69
TraesCS7D01G360200.2	Wheat	nucleus, plastid	77.7	78.45
HORVU7Hr1G087050.1	Barley	cytosol	77.46	78.21
TraesCS7A01G362900.1	Wheat	golgi	77.46	78.21
VIT_18s0041g01900.t01	Wine grape	cytosol	77.94	76.65
Zm00001d053576_P001	Maize	endoplasmic reticulum	79.62	75.97
Bra031676.1-P	Field mustard	cytosol	72.9	73.61
AT1G57720.1	Thale cress	cytosol	72.66	73.37
VIT_12s0035g01130.t01	Wine grape	cytosol	76.02	73.21
PGSC0003DMT400040683	Potato	cytosol	72.42	73.12
KRH01866	Soybean	nucleus	73.62	73.1
Solyc11g028100.1.1	Tomato	cytosol, unclear	72.42	72.95
AT1G09640.1	Thale cress	cytosol	72.42	72.95
Solyc06g011280.2.1	Tomato	extracellular	72.18	72.88
Bra020005.1-P	Field mustard	cytosol	72.18	72.88
KRH26289	Soybean	nucleus	72.9	72.73
PGSC0003DMT400065617	Potato	cytosol	72.18	72.71
KRH06050	Soybean	endoplasmic reticulum	72.9	72.55
KRH51299	Soybean	cytosol, endoplasmic reticulum, nucleus	72.9	72.38
GSMUA_Achr9P19970_001	Banana	cytosol, mitochondrion	14.63	55.45
Bra030790.1-P	Field mustard	cytosol	70.74	52.12
GSMUA_Achr2P13820_001	Banana	cytosol, endoplasmic reticulum, peroxisome, plastid	43.17	48.0
CDY04368	Canola	cytosol	24.22	38.4

Protein Annotations

Gene3D:1.20.1050.10	EntrezGene:100192872	MapMan:17.5.1.2.2	Gene3D:3.30.70.1010	Gene3D:3.40.30.10	UniProt:A0A1D6LSP2
ProteinID:AQK82461.1	ProteinID:AQK82464.1	InterPro:EF1B_G_C	InterPro:EF1B_G_C_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003746	GO:GO:0005488	GO:GO:0005515	GO:GO:0006412	GO:GO:0006414
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR001662	InterPro:IPR004045
InterPro:IPR010987	InterPro:IPR036433	PFAM:PF00043	PFAM:PF00647	PFAM:PF02798	PFscan:PS50040
PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR44372	PANTHER:PTHR44372:SF2	SMART:SM01183	SUPFAM:SSF47616
SUPFAM:SSF52833	SUPFAM:SSF89942	InterPro:Thioredoxin-like_sf	UniParc:UPI00022118F2	EnsemblPlantsGene:Zm00001d036959	EnsemblPlants:Zm00001d036959_P003
EnsemblPlants:Zm00001d036959_T003	SEG:seg	:	:	:	:

Description

elongation factor gamma1Elongation factor gamma1

Coordinates

chr6:+:107398888..107403297

Molecular Weight (calculated)

47179.7 Da

IEP (calculated)

6.289

GRAVY (calculated)

-0.380

Length

417 amino acids

Sequence
(BLAST)

001: MALVLHSGAG NKNAFKALIA AEYSGIKVEL TKDFEMGVSN KTPEFLKMNP LGKVPVLETP DGPVFESNAI ARYVARLKDD NPLFGSSRIE QAHVEQWMDF
101: AATEVDPGVA WYLYPRLGYL PYVSTTEETA ISSLKRSLGA LNTHLASNTY LVGHAVTLAD IVMTCNLYHG IARILTKTFT SDFPHVERYF WTMVNQPNFK
201: KVIGEVKQAE SAPPIPKKAA PSKEPKAKDV KKEAPKEAPK PKVVEAPAEE EAPKPKPKNP LDLLPPSKMV LDDWKRLYSN TKTNFREVAI KGFWDMYDPE
301: GYSLWFCDYK YNDENTVSFV TLNKVGGFLQ RMDLCRKYAF GKMLVIGSEP PFKLKGLWLF RGQDVPKFVM DEVYDMELYE WTKVDISDEA QKERVNAMIE
401: DQEPFEGEAL LDAKCFK

Best Arabidopsis Sequence Match ( AT1G09640.1 )
(BLAST)

001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK

Arabidopsis Description

Probable elongation factor 1-gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:O04487]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.