Factsheet for Zm00001d053576_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
golgi 4
plasma membrane 4
endoplasmic reticulum 6
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04758	Sorghum	plastid	87.19	91.15
Zm00001d016358_P006	Maize	cytosol	87.87	90.57
Os02t0220500-01	Rice	plasma membrane	84.67	89.37
Os02t0220600-02	Rice	extracellular, plasma membrane	81.46	85.17
GSMUA_Achr9P11470_001	Banana	cytosol	72.08	82.03
GSMUA_Achr9P25030_001	Banana	cytosol	68.19	81.42
Zm00001d046352_P001	Maize	plasma membrane	77.35	81.06
Zm00001d036959_P003	Maize	cytosol	75.97	79.62
TraesCS6B01G215000.1	Wheat	cytosol	75.97	78.49
VIT_18s0041g01900.t01	Wine grape	cytosol	75.51	77.83
TraesCS6A01G186000.1	Wheat	cytosol	75.29	77.78
VIT_12s0035g01130.t01	Wine grape	cytosol	75.29	75.98
AT1G57720.1	Thale cress	cytosol	71.62	75.79
KRH01866	Soybean	nucleus	72.77	75.71
PGSC0003DMT400065617	Potato	cytosol	71.4	75.36
AT1G09640.1	Thale cress	cytosol	71.4	75.36
Solyc11g028100.1.1	Tomato	cytosol, unclear	71.17	75.12
PGSC0003DMT400040683	Potato	cytosol	70.71	74.82
Solyc06g011280.2.1	Tomato	extracellular	70.48	74.58
Bra031676.1-P	Field mustard	cytosol	70.48	74.58
Bra020005.1-P	Field mustard	cytosol	70.25	74.33
KRH06050	Soybean	endoplasmic reticulum	71.17	74.22
KRH51299	Soybean	cytosol, endoplasmic reticulum, nucleus	71.17	74.05
KRH26289	Soybean	nucleus	70.71	73.92
GSMUA_Achr9P19970_001	Banana	cytosol, mitochondrion	14.87	59.09
Bra030790.1-P	Field mustard	cytosol	69.11	53.36
GSMUA_Achr2P13820_001	Banana	cytosol, endoplasmic reticulum, peroxisome, plastid	43.25	50.4
CDY04368	Canola	cytosol	24.26	40.3

Protein Annotations

Gene3D:1.20.1050.10	EntrezGene:100284862	MapMan:17.5.1.2.2	Gene3D:3.30.70.1010	Gene3D:3.40.30.10	UniProt:A0A1D6QQD4
ProteinID:AQK59739.1	InterPro:EF1B_G_C	InterPro:EF1B_G_C_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0005488	GO:GO:0005515	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:GST_C
InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR001662	InterPro:IPR004045	InterPro:IPR010987
InterPro:IPR036433	PFAM:PF00043	PFAM:PF00647	PFAM:PF02798	PFscan:PS50040	PFscan:PS50404
PFscan:PS50405	PANTHER:PTHR44372	PANTHER:PTHR44372:SF2	SMART:SM01183	SUPFAM:SSF47616	SUPFAM:SSF52833
SUPFAM:SSF89942	SignalP:SignalP-noTM	InterPro:Thioredoxin-like_sf	UniParc:UPI00084357BF	EnsemblPlantsGene:Zm00001d053576	EnsemblPlants:Zm00001d053576_P001
EnsemblPlants:Zm00001d053576_T001	SEG:seg	:	:	:	:

Description

Probable elongation factor 1-gamma 2

Coordinates

chr4:-:235104770..235108555

Molecular Weight (calculated)

49470.8 Da

IEP (calculated)

6.860

GRAVY (calculated)

-0.239

Length

437 amino acids

Sequence
(BLAST)

001: MAPLGLFLLL CFCSHLFRCS PDLALPVLHA NSGNKNAFKT LIAAEYSGVK VELVKDFQMG VSNKTPEFLK MNPIGKIPVL ETPDGPVFES NAIARYVTRL
101: KADNPLYGSS LIDYAHIEQW IDFAATEIDA NIGKWLYPRM GFYPHAGVVE ESTIAALKRA LGSLSTHLAS NTFLVGHSVT LADIVMTCNL CMGFSRILTK
201: SFTSEFPHVE RYFWTMVNQP NFKKVIGDVK QAEAVPLVPQ KAAPAKVQKP KETKKEAPKP KVTEKSAEEE EAPKPKPKNP LDLLPPSKMI LDDWKRLYSN
301: TKTNFREVAI KGFWDMYDPE GYSLWFCDYK YNDENTVSFV TMNKVGGFLQ RMDLCRKYAF GKMLVVGSEP PFKVKGLWLF RGSEIPKFVM DEVYDMELYE
401: WTKVDLSDEA QKERVNAMIE DQEPFEGEAL LDAKCFK

Best Arabidopsis Sequence Match ( AT1G57720.1 )
(BLAST)

001: MALVMHTYKG NKGANKALIA AEYAGVKIEE SADFQMGVTN KSPEFLKMNP IGKVPVLETP EGPIFESNAI ARYVSRKNGD NSLNGSSLIE YAHIEQWIDF
101: SSLEIDANML KWFAPRMGYA PFSAPAEEAA ISALKRGLEA LNTHLASNTF LVGHSVTLAD IVTICNLNLG FATVMTKKFT SAFPHVERYF WTMVNQPEFK
201: KVLGDAKQTE AVPPVPTKKA PQPAKPKEEP KKAAPVAEAP KPAEEEEAPK PKAKNPLDLL PPSPMVLDDW KRLYSNTKSN FREVAIKGFW DMYDPEGYSL
301: WFCDYKYNDE NMVSFVTLNK VGGFLQRMDL ARKYSFGKML ICGSEGPFKV KGLWLFRGPE IPKFIMDEVY DMELYEWTKV DISDEAQKER VSQMIEDAEP
401: FEGEALLDAK CFK

Arabidopsis Description

Probable elongation factor 1-gamma 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVT2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.