Factsheet for Os02t0220600-02

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

cytosol 6
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 26072143
plasma membrane: 27800704
plastid: 27992503

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0220500-01	Rice	plasma membrane	91.87	92.75
EES04758	Sorghum	plastid	88.76	88.76
Os06t0571400-01	Rice	plasma membrane	85.89	86.3
Zm00001d016358_P006	Maize	cytosol	84.93	83.73
GSMUA_Achr9P11470_001	Banana	cytosol	76.08	82.81
TraesCS6B01G215000.1	Wheat	cytosol	83.49	82.51
GSMUA_Achr9P25030_001	Banana	cytosol	71.77	81.97
Zm00001d053576_P001	Maize	endoplasmic reticulum	85.17	81.46
TraesCS6A01G186000.1	Wheat	cytosol	82.3	81.32
AT1G57720.1	Thale cress	cytosol	77.51	78.45
VIT_18s0041g01900.t01	Wine grape	cytosol	78.95	77.83
Bra031676.1-P	Field mustard	cytosol	76.56	77.48
Solyc11g028100.1.1	Tomato	cytosol, unclear	76.56	77.29
AT1G09640.1	Thale cress	cytosol	76.32	77.05
KRH01866	Soybean	nucleus	77.03	76.67
PGSC0003DMT400065617	Potato	cytosol	75.84	76.57
Bra020005.1-P	Field mustard	cytosol	75.6	76.51
PGSC0003DMT400040683	Potato	cytosol	75.36	76.27
VIT_12s0035g01130.t01	Wine grape	cytosol	78.95	76.21
Solyc06g011280.2.1	Tomato	extracellular	74.88	75.79
KRH51299	Soybean	cytosol, endoplasmic reticulum, nucleus	75.6	75.24
KRH26289	Soybean	nucleus	74.64	74.64
KRH06050	Soybean	endoplasmic reticulum	74.16	73.99
GSMUA_Achr9P19970_001	Banana	cytosol, mitochondrion	16.03	60.91
Bra030790.1-P	Field mustard	cytosol	73.68	54.42
GSMUA_Achr2P13820_001	Banana	cytosol, endoplasmic reticulum, peroxisome, plastid	45.69	50.93
CDY04368	Canola	cytosol	25.84	41.06

Protein Annotations

Gene3D:1.20.1050.10	MapMan:17.5.1.2.2	Gene3D:3.30.70.1010	Gene3D:3.40.30.10	EntrezGene:4328753	ProteinID:BAD17615.1
ProteinID:BAF08232.1	ProteinID:BAS77699.1	ProteinID:BAS77700.1	EMBL:D89802	InterPro:EF1B_G_C	InterPro:EF1B_G_C_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0004364
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006412	GO:GO:0006414	GO:GO:0006749	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	InterPro:GST_C
InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR001662	InterPro:IPR004045	InterPro:IPR010987
InterPro:IPR036433	EnsemblPlantsGene:Os02g0220600	EnsemblPlants:Os02t0220600-02	PFAM:PF00043	PFAM:PF00647	PFAM:PF02798
PFscan:PS50040	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR44372	PANTHER:PTHR44372:SF2	UniProt:Q9ZRI7
SMART:SM01183	SUPFAM:SSF47616	SUPFAM:SSF52833	SUPFAM:SSF89942	InterPro:Thioredoxin-like_sf	UniParc:UPI0000129C54
RefSeq:XP_015625389.1	SEG:seg	:	:	:	:

Description

ELONGATION FACTOR 1B GAMMASimilar to Elongation factor 1-gamma. (Os02t0220600-01);Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma). (Os02t0220600-02)

Coordinates

chr2:+:6721988..6726015

Molecular Weight (calculated)

47481.1 Da

IEP (calculated)

6.399

GRAVY (calculated)

-0.404

Length

418 amino acids

Sequence
(BLAST)

001: MALVLHTFDG NKNAFKALIA AEYSGVKVEL AKNFQMGVSN KTPEYLKMNP IGKVPILETP DGPVFESNAI ARYVTRSKSD NPLYGSSLIE YAHIEQWIDF
101: SATEVDANTG KWLFPRLGFA PYVAVSEEAA IAALKRSLGA LNTHLASNTY LVGHSVTLAD IVMTCNLYMG FARIMTKNFT SEFPHVERYF WTMVNQPNFK
201: KVMGDVKQAD SVPQVQKKAA APKEQKPKEA KKEAPKEAPK PKAAEKPEEE EEAPKPKPKN PLDLLPPSKM ILDEWKRLYS NTKTNFREVA IKGFWDMYDP
301: EGYSLWFCDY KYNDENTVSF VTMNKVGGFL QRMDLCRKYA FGKMLVIGSE PPFKVKGLWL FRGPEIPKFV MDEVYDMELY EWTKVDISDE AQKERVSAMI
401: EDLEPFEGEA LLDAKCFK

Best Arabidopsis Sequence Match ( AT1G57720.1 )
(BLAST)

001: MALVMHTYKG NKGANKALIA AEYAGVKIEE SADFQMGVTN KSPEFLKMNP IGKVPVLETP EGPIFESNAI ARYVSRKNGD NSLNGSSLIE YAHIEQWIDF
101: SSLEIDANML KWFAPRMGYA PFSAPAEEAA ISALKRGLEA LNTHLASNTF LVGHSVTLAD IVTICNLNLG FATVMTKKFT SAFPHVERYF WTMVNQPEFK
201: KVLGDAKQTE AVPPVPTKKA PQPAKPKEEP KKAAPVAEAP KPAEEEEAPK PKAKNPLDLL PPSPMVLDDW KRLYSNTKSN FREVAIKGFW DMYDPEGYSL
301: WFCDYKYNDE NMVSFVTLNK VGGFLQRMDL ARKYSFGKML ICGSEGPFKV KGLWLFRGPE IPKFIMDEVY DMELYEWTKV DISDEAQKER VSQMIEDAEP
401: FEGEALLDAK CFK

Arabidopsis Description

Probable elongation factor 1-gamma 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVT2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.