Factsheet for Os06t0571400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 6
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 19621931
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0220500-01	Rice	plasma membrane	85.58	85.99
Os02t0220600-02	Rice	extracellular, plasma membrane	86.3	85.89
EER89969	Sorghum	cytosol	86.06	85.85
Zm00001d036959_P003	Maize	cytosol	85.34	85.13
Zm00001d046352_P001	Maize	plasma membrane	85.1	84.89
GSMUA_Achr9P11470_001	Banana	cytosol	73.8	79.95
TraesCS7A01G362900.1	Wheat	golgi	78.85	79.42
TraesCS7D01G360200.2	Wheat	nucleus, plastid	78.61	79.18
TraesCS7B01G266300.1	Wheat	cytosol, golgi, plastid, unclear	77.88	79.02
HORVU7Hr1G087050.1	Barley	cytosol	78.37	78.93
GSMUA_Achr9P25030_001	Banana	cytosol	69.23	78.69
VIT_18s0041g01900.t01	Wine grape	cytosol	77.64	76.18
Solyc11g028100.1.1	Tomato	cytosol, unclear	74.76	75.12
KRH01866	Soybean	nucleus	75.72	75.0
KRH26289	Soybean	nucleus	74.52	74.16
Bra031676.1-P	Field mustard	cytosol	73.56	74.09
KRH06050	Soybean	endoplasmic reticulum	74.52	73.99
AT1G09640.1	Thale cress	cytosol	73.32	73.67
Bra020005.1-P	Field mustard	cytosol	73.08	73.61
AT1G57720.1	Thale cress	cytosol	73.08	73.61
PGSC0003DMT400065617	Potato	cytosol	73.08	73.43
KRH51299	Soybean	cytosol, endoplasmic reticulum, nucleus	74.04	73.33
VIT_12s0035g01130.t01	Wine grape	cytosol	76.2	73.21
PGSC0003DMT400040683	Potato	cytosol	72.36	72.88
Solyc06g011280.2.1	Tomato	extracellular	71.88	72.4
GSMUA_Achr9P19970_001	Banana	cytosol, mitochondrion	14.18	53.64
Bra030790.1-P	Field mustard	cytosol	72.6	53.36
GSMUA_Achr2P13820_001	Banana	cytosol, endoplasmic reticulum, peroxisome, plastid	42.07	46.67
CDY04368	Canola	cytosol	24.76	39.16

Protein Annotations

Gene3D:1.20.1050.10	MapMan:17.5.1.2.2	Gene3D:3.30.70.1010	Gene3D:3.40.30.10	EntrezGene:4341354	EMBL:AK068226
EMBL:AK103928	EMBL:AY224444	ProteinID:BAD61828.1	ProteinID:BAD61932.1	ProteinID:BAF19830.1	ProteinID:BAS98320.1
InterPro:EF1B_G_C	InterPro:EF1B_G_C_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746
GO:GO:0003824	GO:GO:0004364	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006412	GO:GO:0006414	GO:GO:0006749
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019538	InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR001662
InterPro:IPR004045	InterPro:IPR010987	InterPro:IPR036433	EnsemblPlantsGene:Os06g0571400	EnsemblPlants:Os06t0571400-01	PFAM:PF00043
PFAM:PF00647	PFAM:PF02798	PFscan:PS50040	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR44372
PANTHER:PTHR44372:SF2	UniProt:Q5Z627	SMART:SM01183	SUPFAM:SSF47616	SUPFAM:SSF52833	SUPFAM:SSF89942
InterPro:Thioredoxin-like_sf	UniParc:UPI0000450684	RefSeq:XP_015643925.1	SEG:seg	:	:

Description

ELONGATION FACTOR 1 GAMMA 2Similar to Elongation factor 1 gamma-like protein (Fragment). (Os06t0571400-01);Similar to Elongation factor 1 gamma-like protein (Fragment). (Os06t0571400-02)

Coordinates

chr6:-:22135785..22139442

Molecular Weight (calculated)

47393.0 Da

IEP (calculated)

6.393

GRAVY (calculated)

-0.359

Length

416 amino acids

Sequence
(BLAST)

001: MALVLHCGSG NKNAFKALIA AEYTGVKVEL TKNFEMGVSN KTPEFLKMNP LGKIPVLETP EGAVFESNAI ARYVARLKDN SSLCGSSLID YSHIEQWMDF
101: SATEVDANIG RWLYPRLGFG PYVPVLEEFA ITSLKRSLGA LNTHLASNTY LVGHSVTLAD IVMTCNLYYG FVRILIKSFT SEFPHVERYF WTMVNQPNFK
201: KVIGDFKQAE SVPPVQKKAA PPKESKAKEA KKEAPKEAPK PKVEASEEEE APKPKPKNPL DLLPPSKMIL DEWKRLYSNT KTNFREIAIK GFWDMYDPEG
301: YSLWFCDYKY NDENTVSFVT MNKVGGFLQR MDLCRKYAFG KMLVIGSTPP FKVKGLWLFR GQDIPKFVMD EVYDMELYEW TKVDLSDEAQ KERVNAMIED
401: QEPFEGEDLL DAKCFK

Best Arabidopsis Sequence Match ( AT1G09640.1 )
(BLAST)

001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK

Arabidopsis Description

Probable elongation factor 1-gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:O04487]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.