Factsheet for VIT_12s0035g01130.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0041g01900.t01	Wine grape	cytosol	85.45	87.26
Os02t0220500-01	Rice	plasma membrane	77.6	81.16
GSMUA_Achr9P25030_001	Banana	cytosol	68.59	81.15
GSMUA_Achr9P11470_001	Banana	cytosol	71.36	80.47
EES04758	Sorghum	plastid	76.67	79.43
Os02t0220600-02	Rice	extracellular, plasma membrane	76.21	78.95
PGSC0003DMT400065617	Potato	cytosol	74.83	78.26
PGSC0003DMT400040683	Potato	cytosol	74.36	77.97
EER89969	Sorghum	cytosol	74.6	77.46
Zm00001d016358_P006	Maize	cytosol	75.52	77.12
Solyc06g011280.2.1	Tomato	extracellular	73.44	77.0
Zm00001d046352_P001	Maize	plasma membrane	74.13	76.98
Solyc11g028100.1.1	Tomato	cytosol, unclear	73.44	76.81
Os06t0571400-01	Rice	plasma membrane	73.21	76.2
Zm00001d036959_P003	Maize	cytosol	73.21	76.02
AT1G57720.1	Thale cress	cytosol	72.29	75.79
Bra031676.1-P	Field mustard	cytosol	71.82	75.3
Bra020005.1-P	Field mustard	cytosol	71.82	75.3
Zm00001d053576_P001	Maize	endoplasmic reticulum	75.98	75.29
AT1G09640.1	Thale cress	cytosol	71.36	74.64
TraesCS6B01G215000.1	Wheat	cytosol	69.75	71.39
TraesCS6A01G186000.1	Wheat	cytosol	69.52	71.16
TraesCS7B01G266300.1	Wheat	cytosol, golgi, plastid, unclear	67.21	70.98
TraesCS7D01G360200.2	Wheat	nucleus, plastid	66.97	70.22
HORVU7Hr1G087050.1	Barley	cytosol	66.74	69.98
TraesCS7A01G362900.1	Wheat	golgi	66.74	69.98
GSMUA_Achr9P19970_001	Banana	cytosol, mitochondrion	15.24	60.0
VIT_12s0035g01120.t01	Wine grape	plastid	57.51	54.85
Bra030790.1-P	Field mustard	cytosol	68.36	52.3
GSMUA_Achr2P13820_001	Banana	cytosol, endoplasmic reticulum, peroxisome, plastid	42.49	49.07

Protein Annotations

Gene3D:1.20.1050.10	EntrezGene:100264325	wikigene:100264325	MapMan:17.5.1.2.2	Gene3D:3.30.70.1010	Gene3D:3.40.30.10
EMBL:AM429026	ProteinID:CAN75785	ProteinID:CAN75785.1	ProteinID:CCB55041	ProteinID:CCB55041.1	InterPro:EF1B_G_C
InterPro:EF1B_G_C_sf	UniProt:F6HK38	EMBL:FN595990	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0003824	GO:GO:0004364	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006412	GO:GO:0006414
GO:GO:0006749	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019538	InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N
InterPro:IPR001662	InterPro:IPR004045	InterPro:IPR010987	InterPro:IPR036433	EntrezGene:LOC100264325	wikigene:LOC100264325
PFAM:PF00043	PFAM:PF00647	PFAM:PF02798	PFscan:PS50040	PFscan:PS50404	PFscan:PS50405
PANTHER:PTHR44372	PANTHER:PTHR44372:SF2	SMART:SM01183	SUPFAM:SSF47616	SUPFAM:SSF52833	SUPFAM:SSF89942
TIGR:TC67584	InterPro:Thioredoxin-like_sf	UniParc:UPI00021087EF	ArrayExpress:VIT_12s0035g01130	EnsemblPlantsGene:VIT_12s0035g01130	EnsemblPlants:VIT_12s0035g01130.t01
unigene:Vvi.8071	RefSeq:XP_002264400	RefSeq:XP_002264400.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:20935505..20942121

Molecular Weight (calculated)

49430.6 Da

IEP (calculated)

8.894

GRAVY (calculated)

-0.456

Length

433 amino acids

Sequence
(BLAST)

001: MALVLHAGKT NKNAYKTLIA AEYSGIKVEL VQNFEMGVSN KTPEFLKMNP IGKVPVLETP DGPVFESNAI ARYVTRLKAD NPLYGSSPIE YGHIEQWIDF
101: ASLEIDANIG HWFRPRIGRA VYLPPFEEAA IAALKRALGA LNTHLASNTF LVGHSVTLAD IVMTCNLYMG FSKLMTKSFT SEFPHVERYF WTMVNQPNFS
201: KILGEVKQTA SVPPVSSAKK PALPKEHAKP KHKDEPKKEV KKEPAKPKEA PVGEEEEAPK PKPKNPLDLL PPSKMILDEW KRLYSNTKTN FREVAIKGFW
301: DMYDPEGYSL WFCDYKYNDE NTVSFVTLNK VGGFLQRMDL ARKYAFGKML VIGSEAPFKV KGLWLFRGQE IPQFIIDECY DMELYEWKKV DISDEAQKER
401: VNQMIEDQEP FEGEALLDAK CFKKWGKNVR KRK

Best Arabidopsis Sequence Match ( AT1G09640.1 )
(BLAST)

001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK

Arabidopsis Description

Probable elongation factor 1-gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:O04487]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.