Factsheet for TraesCS7D01G360200.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

mitochondrion 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22160430
nucleus: 26228564

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G362900.1	Wheat	golgi	99.27	99.27
HORVU7Hr1G087050.1	Barley	cytosol	98.06	98.06
TraesCS7B01G266300.1	Wheat	cytosol, golgi, plastid, unclear	96.85	97.56
Os06t0571400-01	Rice	plasma membrane	79.18	78.61
EER89969	Sorghum	cytosol	78.93	78.18
Zm00001d036959_P003	Maize	cytosol	78.45	77.7
Zm00001d046352_P001	Maize	plasma membrane	77.72	76.98
GSMUA_Achr9P11470_001	Banana	cytosol	70.94	76.3
GSMUA_Achr9P25030_001	Banana	cytosol	66.34	74.86
AT1G57720.1	Thale cress	cytosol	70.7	70.7
AT1G09640.1	Thale cress	cytosol	70.22	70.05
Bra031676.1-P	Field mustard	cytosol	69.98	69.98
VIT_18s0041g01900.t01	Wine grape	cytosol	71.67	69.81
PGSC0003DMT400040683	Potato	cytosol	69.25	69.25
Solyc11g028100.1.1	Tomato	cytosol, unclear	69.25	69.08
Bra020005.1-P	Field mustard	cytosol	69.01	69.01
Solyc06g011280.2.1	Tomato	extracellular	68.77	68.77
KRH01866	Soybean	nucleus	69.73	68.57
PGSC0003DMT400065617	Potato	cytosol	68.52	68.36
KRH26289	Soybean	nucleus	68.77	67.94
KRH51299	Soybean	cytosol, endoplasmic reticulum, nucleus	69.01	67.86
KRH06050	Soybean	endoplasmic reticulum	68.28	67.3
VIT_12s0035g01130.t01	Wine grape	cytosol	70.22	66.97
GSMUA_Achr9P19970_001	Banana	cytosol, mitochondrion	14.04	52.73
Bra030790.1-P	Field mustard	cytosol	67.55	49.29
GSMUA_Achr2P13820_001	Banana	cytosol, endoplasmic reticulum, peroxisome, plastid	40.92	45.07
CDY04368	Canola	cytosol	23.97	37.64

Protein Annotations

Gene3D:1.20.1050.10	MapMan:17.5.1.2.2	Gene3D:3.30.70.1010	Gene3D:3.40.30.10	InterPro:EF1B_G_C	InterPro:EF1B_G_C_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0005488	GO:GO:0005515
GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:GST_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N
InterPro:IPR001662	InterPro:IPR004045	InterPro:IPR010987	InterPro:IPR036433	PFAM:PF00043	PFAM:PF00647
PFAM:PF02798	PFscan:PS50040	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR44372	PANTHER:PTHR44372:SF2
SMART:SM01183	SUPFAM:SSF47616	SUPFAM:SSF52833	SUPFAM:SSF89942	InterPro:Thioredoxin-like_sf	EnsemblPlantsGene:TraesCS7D01G360200
EnsemblPlants:TraesCS7D01G360200.2	TIGR:cd03044	TIGR:cd03181	SEG:seg	:	:

Description

No Description!

Coordinates

chr7D:+:463038398..463041130

Molecular Weight (calculated)

46838.4 Da

IEP (calculated)

6.532

GRAVY (calculated)

-0.339

Length

413 amino acids

Sequence
(BLAST)

001: MALVLHSGSG NKNAFKALIA AEYCGVKVEL TKNFEMGVSN KTPEFIKMNP LGKVPVLETP DGAVFESNAI ARYVARSKGD NLLWGGSLIE YARVEQWMDF
101: GATEVDPNIA RWLYPRLGYM PYNAQSEEFG IAGLKRALEA LNTHLASNTF LVGHSVTLAD IVMTCNLYHG FARILTKTFT SEFPHVERYF WTMVNQPNFK
201: KVIGDFKQAE VVPPVQKKAA PAKPKEAKKE APKAAPKPAE VEAPEEEAPK PKPKNPLDLL PPSKMVLDDW KRLYSNTKSN FHDVAVKGFW EMYDPEGYSL
301: WFCDYKYQEE NTVSYVTLNK VGGFLQRMDL CRKYAFGKML VIGSEAPFKV KGLWLFRGQD IPEFVMNEVY DMELYEWTKV DLSDEAQKKR VEAMIEDLEP
401: FEGQALLDAK CFK

Best Arabidopsis Sequence Match ( AT1G09640.1 )
(BLAST)

001: MALVLHTYKG NKSAEKALIA AEYVGVQIDV PSDFQMGVTN KTPAFLKMNP IGKVPVLETP EGSVFESNAI ARYVSRLNGD NSLNGSSLIE YAQIEQWIDF
101: SSLEIYASIL RWFGPRMGFM PYSAPAEEGA ISTLKRALDA LNTHLTSNTY LVGHSITLAD IITVCNLNLG FATVMTKKFT SEFPHVERYF WTVVNQPNFT
201: KVLGDVKQTE AVPPIASKKA AQPAKPKEEP KKKEAPVAEA PKLAEEEEAP KPKAKNPLDL LPPSPMVLDD WKRLYSNTKS NFREVAIKGF WDMYDPEGYS
301: LWFCDYKYND ENMVSFVTLN KVGGFLQRMD LARKYSFGKM LICGSEGPFK VKGLWLFRGP EIPKFIMDEV YDMELYEWTK VDISDEAQKE RVSQMIEDAE
401: PFEGEALLDA KCFK

Arabidopsis Description

Probable elongation factor 1-gamma 1 [Source:UniProtKB/Swiss-Prot;Acc:O04487]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.